DPOGS209692 | ||
---|---|---|
Transcript | DPOGS209692-TA | 735 bp |
Protein | DPOGS209692-PA | 244 aa |
Genomic position | DPSCF300309 - 142732-144948 | |
RNAseq coverage | 430x (Rank: top 28%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL022605 | 7e-73 | 59.23% |   |
Bombyx | BGIBMGA014402-TA | 5e-61 | 52.07% |   |
Drosophila | Smn-PA | 2e-17 | 30.25% |   |
EBI UniRef50 | UniRef50_E9GUA8 | 3e-26 | 32.07% | Putative uncharacterized protein n=1 Tax=Daphnia pulex RepID=E9GUA8_DAPPU |
NCBI RefSeq | XP_001599489.1 | 2e-22 | 32.21% | PREDICTED: similar to survival of motor neuron 1, telomeric [Nasonia vitripennis] |
NCBI nr blastp | gi|340715211 | 2e-31 | 35.63% | PREDICTED: survival motor neuron protein-like [Bombus terrestris] |
NCBI nr blastx | gi|340715211 | 4e-36 | 36.03% | PREDICTED: survival motor neuron protein-like [Bombus terrestris] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0006397 | 7.5e-16 | mRNA processing | |
GO:0005634 | 7.5e-16 | nucleus | ||
GO:0003723 | 7.5e-16 | RNA binding | ||
GO:0005737 | 7.5e-16 | cytoplasm | ||
KEGG pathway |   | |||
InterPro domain | [21-198] IPR010304 | 7.5e-16 | Survival motor neuron | |
Orthology group | MCL12029 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS209692-TA
ATGTCCAGAAATGATGTTTTGTATGTAAAAGGCATGGCTTTTTCTGACACAGACGAAGCAGAAGAAGATATTTGGGATGATAGCAAACTCAATGATGCATATGACAAAGCTCTGAAAATAGCAAACGCCGAGGTGGCTAAGAGGGTAGCCATGTCGACTAACACTGCACAGAGTAAAGATGCAAACAGTAAAACAAAGTCTAAATCGAATAAATGCCCTAAGTGGAAAGTCGGAATGCATTGTCGGGCTGCGTATGAAGGCGATGGAATTGAATACGAGGCAGTTCTCCTGAGAATTATTAATGATAAAGAATGTGTTATTAAATTTATAGGTTACGATAACACAGAACTGGTGTCAATGAGCGATTTGAAACAAAGTCTGGGTAATGCGGAACGTGAACAACAAATGAAGGACTCGCTAGCTGATAAAAATAATGATTTACAGAATTATATGGACATTAGTGACCGGGCTACATCACCGGGGAGTACAGCATCCTTACAAAGGAAGAAAAAAAACGGCAAAAAGAAAAATAAACAAAAACATAGAAATAGTTTTGAATTCCCCGATATTCCTTTGCCAAATTTACCTCAGTTTAGAAATTTCTCTCCGCTAGATGTCCCTCCGCCAATGTTACATCCTCCACAGGAGTCGGAGGACCAAGCTCTATCTTCAATGCTACTGAGTTGGTACATGAGCGGTTATTACACTGGTTTATATCAAGGAATTAAGAGGTGA
>DPOGS209692-PA
MSRNDVLYVKGMAFSDTDEAEEDIWDDSKLNDAYDKALKIANAEVAKRVAMSTNTAQSKDANSKTKSKSNKCPKWKVGMHCRAAYEGDGIEYEAVLLRIINDKECVIKFIGYDNTELVSMSDLKQSLGNAEREQQMKDSLADKNNDLQNYMDISDRATSPGSTASLQRKKKNGKKKNKQKHRNSFEFPDIPLPNLPQFRNFSPLDVPPPMLHPPQESEDQALSSMLLSWYMSGYYTGLYQGIKR-