DPOGS210093 | ||
---|---|---|
Transcript | DPOGS210093-TA | 612 bp |
Protein | DPOGS210093-PA | 203 aa |
Genomic position | DPSCF300017 + 576801-578088 | |
RNAseq coverage | 1421x (Rank: top 9%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL015473 | 2e-102 | 97.04% |   |
Bombyx | BGIBMGA012673-TA | 7e-98 | 96.43% |   |
Drosophila | Chmp1-PA | 2e-91 | 88.18% |   |
EBI UniRef50 | UniRef50_Q7LBR1 | 4e-66 | 75.13% | Charged multivesicular body protein 1b n=118 Tax=Eukaryota RepID=CHM1B_HUMAN |
NCBI RefSeq | NP_001040238.1 | 3e-101 | 97.04% | chromatin modifying protein 1b [Bombyx mori] |
NCBI nr blastp | gi|114052338 | 5e-100 | 97.04% | chromatin modifying protein 1b [Bombyx mori] |
NCBI nr blastx | gi|114052338 | 2e-102 | 97.04% | chromatin modifying protein 1b [Bombyx mori] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0015031 | 6.7e-35 | protein transport | |
KEGG pathway | dan:Dana_GF10809 | 1e-98 |   | |
  | K12197 (CHMP1, VPS46, DID2) | maps-> | Endocytosis | |
InterPro domain | [11-174] IPR005024 | 6.7e-35 | Snf7 | |
Orthology group | MCL14761 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS210093-TA
ATGTCATCGTCTGCTATGGAAAAGCACCTATTTAATTTAAAATTTGCTGTAAAAGAACTAGAACGAAATTCAAAGAAATGCGAAAAAGAAGAGAAGTTAGAAAAGGACAAGGCAAAGAAAGCCATACAAAAGGGTAATATGGAAGTTGCTAGAATACATGCCGAAAATGCTATAAGACAAAAGAATCAAGCTATTAATTACCTCAGAATGTCTGCAAGGGTTGATGCTGTGTCTAGTAGAGTGCAGACCGCTCTTACTACACGGAAGGTAACAAATTCAATGGCGGGAGTTGTGAAAGCAATGGATGCTGCAATGAAATCAATGAATCTTGAGAAGATATCCACTCTGATGGACAAATTTGAGAGTCAGTTTGAGGATCTGGATGTTCAGTCATCATACATGGAGAATGCAATGTCACAAACGACTACAACAACAGTACCTCAGGGTGACGTTGAAAAGCTGTTACAGCAAGTCGCTGACGAGGCTGGCTTGGAGTTGAACATGGAACTGCCATCCGGGGTCCCCAGCACGTCGGTCGGTACAGCCACAGTAGTTTCTCAAGAACAGGATGAACTTACTCAAAGACTGGCTAGGCTTAGACAAGCTGAATAA
>DPOGS210093-PA
MSSSAMEKHLFNLKFAVKELERNSKKCEKEEKLEKDKAKKAIQKGNMEVARIHAENAIRQKNQAINYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVEKLLQQVADEAGLELNMELPSGVPSTSVGTATVVSQEQDELTQRLARLRQAE-