| DPOGS210605 | ||
|---|---|---|
| Transcript | DPOGS210605-TA | 615 bp |
| Protein | DPOGS210605-PA | 204 aa |
| Genomic position | DPSCF300168 + 5550-6975 | |
| RNAseq coverage | 11x (Rank: top 84%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL005904 | 1e-65 | 68.60% | |
| Bombyx | % | |||
| Drosophila | Xpac-PA | 2e-46 | 41.99% | |
| EBI UniRef50 | UniRef50_P28518 | 3e-44 | 41.99% | DNA repair protein complementing XP-A cells homolog n=14 Tax=Diptera RepID=XPA_DROME |
| NCBI RefSeq | XP_002011180.1 | 9e-49 | 45.37% | GI16151 [Drosophila mojavensis] |
| NCBI nr blastp | gi|195133506 | 1e-47 | 45.37% | GI16151 [Drosophila mojavensis] |
| NCBI nr blastx | gi|242021045 | 8e-49 | 48.78% | DNA-repair protein, putative [Pediculus humanus corporis] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005634 | 2.7e-59 | nucleus | |
| GO:0003684 | 2.7e-59 | damaged DNA binding | ||
| GO:0006289 | 2.7e-59 | nucleotide-excision repair | ||
| GO:0000166 | 8.8e-27 | nucleotide binding | ||
| KEGG pathway | dpo:Dpse_GA19537 | 1e-46 | ||
| K10847 (XPA) | maps-> | Nucleotide excision repair | ||
| InterPro domain | [18-204] IPR000465 | 2.7e-59 | XPA | |
| [126-200] IPR009061 | 8.8e-27 | DNA binding domain, putative | ||
| [126-178] IPR022656 | 5.3e-20 | XPA C- terminal | ||
| [93-125] IPR022652 | 3e-12 | Zinc finger, XPA-type, conserved site | ||
| Orthology group | MCL11858 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS210605-TA
ATGGAAACGGAATCAAGTAAAGAATGTCCGACTTCCGAGACCAAGGAGGGATCACTTACTGCTGCCCAAAGGGCTCGGCTGGAGCGGAACAAGAGTAGGGCACTCGCACTGAGAGAAGCTCGTCTTGTCAAGCGCCCAACAGAAGACAAGAACGACCGCATCGAAAAGAAGTCGATGCGTCCGGTGGACTCCGGCGGCGGCTTCCTGCTGGAGGCAGAGGAGGACGTGGCGACCCCCGCGCCCCGCGCCCCGCCTGCGCCCATCGTGCACCGCCCCGACCAGCCGCGCTGCCTTCACTGCGGCTCGCCCTTTCCGCAGTCCTATCTGTTGGACACCTTCGATTACAACGCCTGCGACGCCTGCAGGGACGACGAGGACAAACATGAGCTGATCACCCGGACGGAGGCCAAGAGCGAGTTCCTGCTGAAGGACTGCGACCTGGACGCTCGGCCGCCGCCGCTGAGGTGTGTAAGGCGCCGAAACCCGCACCGCGCGCGCTTCGCCGAGATGAGACTGTACCTGCGCGTGCAGGTGGAGCAGCGCGCCCTCGAGGTGTGGGGCTCCGAGGAGCAGCTACGGCGGGAACGGGAGGAGCGGGACAGGCGCCGAGAATAG
>DPOGS210605-PA
METESSKECPTSETKEGSLTAAQRARLERNKSRALALREARLVKRPTEDKNDRIEKKSMRPVDSGGGFLLEAEEDVATPAPRAPPAPIVHRPDQPRCLHCGSPFPQSYLLDTFDYNACDACRDDEDKHELITRTEAKSEFLLKDCDLDARPPPLRCVRRRNPHRARFAEMRLYLRVQVEQRALEVWGSEEQLRREREERDRRRE-