DPOGS210605 | ||
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Transcript | DPOGS210605-TA | 615 bp |
Protein | DPOGS210605-PA | 204 aa |
Genomic position | DPSCF300168 + 5550-6975 | |
RNAseq coverage | 11x (Rank: top 84%) |
Annotation | ||||
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Heliconius | HMEL005904 | 1e-65 | 68.60% |   |
Bombyx | % |   | ||
Drosophila | Xpac-PA | 2e-46 | 41.99% |   |
EBI UniRef50 | UniRef50_P28518 | 3e-44 | 41.99% | DNA repair protein complementing XP-A cells homolog n=14 Tax=Diptera RepID=XPA_DROME |
NCBI RefSeq | XP_002011180.1 | 9e-49 | 45.37% | GI16151 [Drosophila mojavensis] |
NCBI nr blastp | gi|195133506 | 1e-47 | 45.37% | GI16151 [Drosophila mojavensis] |
NCBI nr blastx | gi|242021045 | 8e-49 | 48.78% | DNA-repair protein, putative [Pediculus humanus corporis] |
Group | ||||
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Gene Ontology | GO:0005634 | 2.7e-59 | nucleus | |
GO:0003684 | 2.7e-59 | damaged DNA binding | ||
GO:0006289 | 2.7e-59 | nucleotide-excision repair | ||
GO:0000166 | 8.8e-27 | nucleotide binding | ||
KEGG pathway | dpo:Dpse_GA19537 | 1e-46 |   | |
  | K10847 (XPA) | maps-> | Nucleotide excision repair | |
InterPro domain | [18-204] IPR000465 | 2.7e-59 | XPA | |
[126-200] IPR009061 | 8.8e-27 | DNA binding domain, putative | ||
[126-178] IPR022656 | 5.3e-20 | XPA C- terminal | ||
[93-125] IPR022652 | 3e-12 | Zinc finger, XPA-type, conserved site | ||
Orthology group | MCL11858 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS210605-TA
ATGGAAACGGAATCAAGTAAAGAATGTCCGACTTCCGAGACCAAGGAGGGATCACTTACTGCTGCCCAAAGGGCTCGGCTGGAGCGGAACAAGAGTAGGGCACTCGCACTGAGAGAAGCTCGTCTTGTCAAGCGCCCAACAGAAGACAAGAACGACCGCATCGAAAAGAAGTCGATGCGTCCGGTGGACTCCGGCGGCGGCTTCCTGCTGGAGGCAGAGGAGGACGTGGCGACCCCCGCGCCCCGCGCCCCGCCTGCGCCCATCGTGCACCGCCCCGACCAGCCGCGCTGCCTTCACTGCGGCTCGCCCTTTCCGCAGTCCTATCTGTTGGACACCTTCGATTACAACGCCTGCGACGCCTGCAGGGACGACGAGGACAAACATGAGCTGATCACCCGGACGGAGGCCAAGAGCGAGTTCCTGCTGAAGGACTGCGACCTGGACGCTCGGCCGCCGCCGCTGAGGTGTGTAAGGCGCCGAAACCCGCACCGCGCGCGCTTCGCCGAGATGAGACTGTACCTGCGCGTGCAGGTGGAGCAGCGCGCCCTCGAGGTGTGGGGCTCCGAGGAGCAGCTACGGCGGGAACGGGAGGAGCGGGACAGGCGCCGAGAATAG
>DPOGS210605-PA
METESSKECPTSETKEGSLTAAQRARLERNKSRALALREARLVKRPTEDKNDRIEKKSMRPVDSGGGFLLEAEEDVATPAPRAPPAPIVHRPDQPRCLHCGSPFPQSYLLDTFDYNACDACRDDEDKHELITRTEAKSEFLLKDCDLDARPPPLRCVRRRNPHRARFAEMRLYLRVQVEQRALEVWGSEEQLRREREERDRRRE-