| DPOGS210833 | ||
|---|---|---|
| Transcript | DPOGS210833-TA | 399 bp |
| Protein | DPOGS210833-PA | 132 aa |
| Genomic position | DPSCF300027 - 55508-56019 | |
| RNAseq coverage | 19058x (Rank: top 1%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL021302 | 5e-72 | 99.24% | |
| Bombyx | BGIBMGA003923-TA | 1e-72 | 100.00% | |
| Drosophila | RpS24-PA | 4e-60 | 82.44% | |
| EBI UniRef50 | UniRef50_B0X1C1 | 5e-55 | 82.17% | 60S ribosomal protein L17 n=4 Tax=Coelomata RepID=B0X1C1_CULQU |
| NCBI RefSeq | NP_001093077.1 | 4e-71 | 100.00% | ribosomal protein S24 [Bombyx mori] |
| NCBI nr blastp | gi|151301000 | 1e-69 | 100.00% | ribosomal protein S24 [Bombyx mori] |
| NCBI nr blastx | gi|151301000 | 1e-69 | 100.00% | ribosomal protein S24 [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005840 | 1.8e-99 | ribosome | |
| GO:0006412 | 1.8e-99 | translation | ||
| GO:0005622 | 1.8e-99 | intracellular | ||
| GO:0003735 | 1.8e-99 | structural constituent of ribosome | ||
| GO:0000166 | 3.5e-48 | nucleotide binding | ||
| KEGG pathway | tca:655928 | 3e-63 | ||
| K02974 (RP-S24e, RPS24) | maps-> | Ribosome | ||
| InterPro domain | [5-128] IPR001976 | 1.8e-99 | Ribosomal protein S24e | |
| [7-107] IPR012677 | 3.5e-48 | Nucleotide-binding, alpha-beta plait | ||
| [6-107] IPR012678 | 8.9e-41 | Ribosomal protein L23/L15e | ||
| Orthology group | MCL12131 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS210833-TA
ATGAGTGAAGGCACAGCCACTATTCGCACTCGCAAATTTATGACCAACAGATTGTTGGCGCGCAAGCAGATGGTCTGCGATGTCCTTCATCCAGGAAAACCCACTGTTAGTAAAACTGAGATCCGTGAGAAGCTCGCGAAGATGTACAAGGTGACGCCAGACGTTGTCTTCGTATTTGGTTTCAAAACGAACTTCGGTGGTGGAAAATCCACTGGTTTCGCCTTAATATACGACACTCTGGATCTGGCTAAAAAGTTTGAGCCCAAACACAGACTTGCTCGCCACGGACTGTATGAGAAGAAGAGGCCGACACGCAAACAGCGTAAGGAACGTAAGAACAGGATGAAGAAGGTGCGTGGTACCAAGAAATCCAAGGTCGGAGCTGCGTCTAAGAAGTGA
>DPOGS210833-PA
MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAASKK-