DPOGS210897 | ||
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Transcript | DPOGS210897-TA | 669 bp |
Protein | DPOGS210897-PA | 222 aa |
Genomic position | DPSCF300045 - 701759-702427 | |
RNAseq coverage | 24x (Rank: top 78%) |
Annotation | ||||
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Heliconius | HMEL002857 | 2e-103 | 82.88% |   |
Bombyx | BGIBMGA003078-TA | 1e-76 | 69.63% |   |
Drosophila | Sox21b-PA | 3e-33 | 71.26% |   |
EBI UniRef50 | UniRef50_G7YF27 | 1e-31 | 65.31% | Transcription factor SOX1/2/3/14/21 n=1 Tax=Clonorchis sinensis RepID=G7YF27_CLOSI |
NCBI RefSeq | XP_002048056.1 | 3e-32 | 71.26% | GJ11556 [Drosophila virilis] |
NCBI nr blastp | gi|340721649 | 3e-32 | 61.21% | PREDICTED: SOX domain-containing protein dichaete-like [Bombus terrestris] |
NCBI nr blastx | gi|340721649 | 4e-32 | 55.81% | PREDICTED: SOX domain-containing protein dichaete-like [Bombus terrestris] |
Group | ||||
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Gene Ontology | GO:0003677 | 1.3e-30 | DNA binding | |
GO:0005515 | 8.8e-27 | protein binding | ||
KEGG pathway |   | |||
InterPro domain | [24-102] IPR000910 | 1.3e-30 | High mobility group, HMG1/HMG2 | |
[5-97] IPR009071 | 8.8e-27 | High mobility group, superfamily | ||
Orthology group | MCL26729 |   | Lepidoptera specific |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS210897-TA
ATGTCTTATCCGTTGGAAAATCCACAAGCAAAGTCAGTGACGAAACTATCGAGAAATTCAAACCCCTATCACATAAAACGTCCCATGAACGCGTTTATGGTTTGGTCGAGGCTACAGCGGAAGAAGATATCCTCTTTGAACCCGAAACTTCATAACTCCGAGATATCAAAACGGCTCGGTCTAGAATGGAAGAGTCTAGACGACTCCGAGAAGAGACCGTTTATAGATGAGGCAAAGAGGTTGCGGCTGAAACACATGCACGACTATCCAGACTATAAGTACAGACCGCGTCGGAAAAACAGGATGGACGCCTCAATATATGGACCTACTTCTTTATATTCATCTCGAGAGAGCTTCGTAGAAATAGAACCGAGGGTCGAAGCCAGCTATCCGATACCAATCAACTATTCCGATCCGCAGTACATGTACAACAACGTTATAAGTTACACGGTGCCTATAAATCAGGCTCCTTTCGTTTCCCCCATAAGACCCAAAGAGGAGACCTTGCCGAGTTTAGATTTGAGGCCTCTGCCGTCGATCGAGAGCATTTCCCCGAGGCCGTTCGCGGTCGTGAACCAGCAGATGATGGTGAAGTCTTACCCCAACCTGCACTACGTCCCTGAAGACGTCGCGAGGATATCGTATCATTACCCCTTCAGTGTGCAGTAG
>DPOGS210897-PA
MSYPLENPQAKSVTKLSRNSNPYHIKRPMNAFMVWSRLQRKKISSLNPKLHNSEISKRLGLEWKSLDDSEKRPFIDEAKRLRLKHMHDYPDYKYRPRRKNRMDASIYGPTSLYSSRESFVEIEPRVEASYPIPINYSDPQYMYNNVISYTVPINQAPFVSPIRPKEETLPSLDLRPLPSIESISPRPFAVVNQQMMVKSYPNLHYVPEDVARISYHYPFSVQ-