DPOGS211218 | ||
---|---|---|
Transcript | DPOGS211218-TA | 414 bp |
Protein | DPOGS211218-PA | 137 aa |
Genomic position | DPSCF300007 + 1125634-1126702 | |
RNAseq coverage | 18896x (Rank: top 1%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL012481 | 7e-73 | 98.46% |   |
Bombyx | BGIBMGA003197-TA | 3e-76 | 98.54% |   |
Drosophila | RpS18-PB | 2e-68 | 88.32% |   |
EBI UniRef50 | UniRef50_Q962R1 | 4e-74 | 99.27% | 40S ribosomal protein S18 n=78 Tax=root RepID=RS18_SPOFR |
NCBI RefSeq | NP_001037269.1 | 8e-75 | 98.54% | ribosomal protein S18 [Bombyx mori] |
NCBI nr blastp | gi|54039447 | 1e-73 | 99.27% | ribosomal protein S18 [Spodoptera frugiperda] |
NCBI nr blastx | gi|54039447 | 1e-72 | 99.27% | ribosomal protein S18 [Spodoptera frugiperda] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0005840 | 7.6e-59 | ribosome | |
GO:0003723 | 7.6e-59 | RNA binding | ||
GO:0006412 | 7.6e-59 | translation | ||
GO:0005622 | 7.6e-59 | intracellular | ||
GO:0003735 | 7.6e-59 | structural constituent of ribosome | ||
GO:0003676 | 3.7e-35 | nucleic acid binding | ||
KEGG pathway | tca:662445 | 2e-71 |   | |
  | K02964 (RP-S18e, RPS18) | maps-> | Ribosome | |
InterPro domain | [1-138] IPR001892 | 7.6e-59 | Ribosomal protein S13 | |
[1-137] IPR010979 | 3.7e-35 | Ribosomal protein S13-like, H2TH | ||
Orthology group | MCL10690 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS211218-TA
ATGAATACGAATATTGATGGCAAACGCAAGGTTATGTTTGCTATGACCGCTATTAAGGGAGTCGGTCGTCGATATTCTAATATTGTATTGAAAAAAGCCGACATCGACCTGGACAAACGTGCCGGGGAATGTACGGAAGAAGAGGTTGAGAAAATTGTAACAATCATGTCACATCCGAGACAATACAAAATCCCCGATTGGTTCCTCAACAGACAGAAAGACATTGTTGATGGCAAGTACAGCCAATTGACGTCATCCAACTTGGATTCCAAGCTCCGTGAGGATTTGGAAAGGTTAAAGAAGATCAGGGCTCACAGAGGCATGCGTCACTACTGGGGTCTCCGTGTGCGTGGTCAACATACCAAGACCACCGGCAGACGCGGTAGAACTGTTGGTGTGTCCAAGAAGAAGTAA
>DPOGS211218-PA
MNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIVTIMSHPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK-