| DPOGS211278 | ||
|---|---|---|
| Transcript | DPOGS211278-TA | 450 bp |
| Protein | DPOGS211278-PA | 149 aa |
| Genomic position | DPSCF300161 - 339507-340402 | |
| RNAseq coverage | 139x (Rank: top 55%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL002651 | 2e-62 | 85.52% | |
| Bombyx | BGIBMGA012459-TA | 1e-61 | 88.98% | |
| Drosophila | Taf13-PA | 4e-53 | 84.21% | |
| EBI UniRef50 | UniRef50_Q9VIP1 | 4e-51 | 84.21% | RE52427p n=21 Tax=Bilateria RepID=Q9VIP1_DROME |
| NCBI RefSeq | NP_001040516.1 | 3e-60 | 89.68% | TBP-associated factor 13 isoform 2 [Bombyx mori] |
| NCBI nr blastp | gi|114052310 | 6e-59 | 89.68% | TBP-associated factor 13 isoform 2 [Bombyx mori] |
| NCBI nr blastx | gi|114052310 | 3e-57 | 89.68% | TBP-associated factor 13 isoform 2 [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0006366 | 2.8e-78 | transcription from RNA polymerase II promoter | |
| GO:0003677 | 5e-22 | DNA binding | ||
| KEGG pathway | nvi:100122836 | 1e-51 | ||
| K03127 (TFIID11) | maps-> | Basal transcription factors | ||
| InterPro domain | [1-127] IPR003195 | 2.8e-78 | Transcription initiation factor IID, 18kDa subunit | |
| [34-78] IPR009072 | 5e-22 | Histone-fold | ||
| Orthology group | MCL14121 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS211278-TA
ATGGCAACTCCGTCTTCTGATACTGCAGATCAATTTGATCAATTTGATGACGAAGAAGCAGAACAACAATTGGGTGCTACAGCATCTGGTAGGAAAAGACTTTTCAGCAAAGAACTGCGATGTATGATGTACGGTTTCGGCGATGATAAGAATCCATATACAGAAAGCGTCGATTTCTTAGAAGATCTTGTCATTGAATTTATTACAGAAACTACACATAAAGCTATGGAAGTTGGTAGACCAGGAAGGGTTCAGGTGGAAGATATAATATTTTTGGTGCGTAAAGATCCTCGAAAATATGCAAGAGTAAAGGATTTGTTAACTATGAATGAAGAGCTCAAGAAAGCTAGAAAAGCTTTTGATGAAGTCAAATATGTTGGTAAAAGACCAACAATAGTGATTGATCGACATGATGCTCTCAGACTGATGCAAGTAACACCAATATATTGA
>DPOGS211278-PA
MATPSSDTADQFDQFDDEEAEQQLGATASGRKRLFSKELRCMMYGFGDDKNPYTESVDFLEDLVIEFITETTHKAMEVGRPGRVQVEDIIFLVRKDPRKYARVKDLLTMNEELKKARKAFDEVKYVGKRPTIVIDRHDALRLMQVTPIY-