DPOGS211526 | ||
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Transcript | DPOGS211526-TA | 378 bp |
Protein | DPOGS211526-PA | 125 aa |
Genomic position | DPSCF300354 + 243178-243555 | |
RNAseq coverage | 15x (Rank: top 82%) |
Annotation | ||||
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Heliconius | HMEL013223 | 1e-45 | 100.00% |   |
Bombyx | BGIBMGA003840-TA | 5e-49 | 96.84% |   |
Drosophila | SmD1-PA | 2e-40 | 79.57% |   |
EBI UniRef50 | UniRef50_P62314 | 2e-38 | 82.29% | Small nuclear ribonucleoprotein Sm D1 n=204 Tax=Eukaryota RepID=SMD1_HUMAN |
NCBI RefSeq | NP_001040404.1 | 5e-47 | 95.79% | small nuclear ribonucleoprotein Sm D1 [Bombyx mori] |
NCBI nr blastp | gi|114050791 | 1e-45 | 95.79% | small nuclear ribonucleoprotein Sm D1 [Bombyx mori] |
NCBI nr blastx | gi|114050791 | 1e-61 | 95.24% | small nuclear ribonucleoprotein Sm D1 [Bombyx mori] |
Group | ||||
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KEGG pathway | phu:Phum_PHUM538040 | 3e-40 |   | |
  | K11087 (SNRPD1, SMD1) | maps-> | Spliceosome | |
  |   |   | Systemic lupus erythematosus | |
InterPro domain | [3-125] IPR010920 | 3.2e-27 | Like-Sm ribonucleoprotein (LSM)-related domain | |
[6-68] IPR001163 | 2.2e-17 | Like-Sm ribonucleoprotein (LSM) domain | ||
[5-70] IPR006649 | 3.8e-17 | Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | ||
Orthology group | MCL12129 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS211526-TA
ATGAAGCTAGTGAGGTTTTTGATGAAATTGAGTCATGAAACTGTGACTATTGAGCTTAAGAACGGCAGTGTTGTCCACGGTACAATCACCGGCGTCGATGTAGCTATGAACACACATTTAAAGGCTGTTAAAGTTACATTGAAAAACAAAGAGGAACTACAGTTAGAAACACTTAGTATACGTGGAAACAATATTAGATATTTCCTGCTTCCAGACAGTTTACCTTTAGAGACATTATTAATAGACGATGCTCCTAAAGGTAAGGGCAAACGGGAAGGTTTCGCCAGAGGTGGCACTAGAGGAGGAAGGGGCCGAGGCAGAGGCGGCCGTGGAGGTCCTAGAGGTGGGAGAGGCGGCAGAGGTCGTGGCCGTCGATAA
>DPOGS211526-PA
MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNKEELQLETLSIRGNNIRYFLLPDSLPLETLLIDDAPKGKGKREGFARGGTRGGRGRGRGGRGGPRGGRGGRGRGRR-