| DPOGS211526 | ||
|---|---|---|
| Transcript | DPOGS211526-TA | 378 bp |
| Protein | DPOGS211526-PA | 125 aa |
| Genomic position | DPSCF300354 + 243178-243555 | |
| RNAseq coverage | 15x (Rank: top 82%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL013223 | 1e-45 | 100.00% | |
| Bombyx | BGIBMGA003840-TA | 5e-49 | 96.84% | |
| Drosophila | SmD1-PA | 2e-40 | 79.57% | |
| EBI UniRef50 | UniRef50_P62314 | 2e-38 | 82.29% | Small nuclear ribonucleoprotein Sm D1 n=204 Tax=Eukaryota RepID=SMD1_HUMAN |
| NCBI RefSeq | NP_001040404.1 | 5e-47 | 95.79% | small nuclear ribonucleoprotein Sm D1 [Bombyx mori] |
| NCBI nr blastp | gi|114050791 | 1e-45 | 95.79% | small nuclear ribonucleoprotein Sm D1 [Bombyx mori] |
| NCBI nr blastx | gi|114050791 | 1e-61 | 95.24% | small nuclear ribonucleoprotein Sm D1 [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| KEGG pathway | phu:Phum_PHUM538040 | 3e-40 | ||
| K11087 (SNRPD1, SMD1) | maps-> | Spliceosome | ||
| Systemic lupus erythematosus | ||||
| InterPro domain | [3-125] IPR010920 | 3.2e-27 | Like-Sm ribonucleoprotein (LSM)-related domain | |
| [6-68] IPR001163 | 2.2e-17 | Like-Sm ribonucleoprotein (LSM) domain | ||
| [5-70] IPR006649 | 3.8e-17 | Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | ||
| Orthology group | MCL12129 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS211526-TA
ATGAAGCTAGTGAGGTTTTTGATGAAATTGAGTCATGAAACTGTGACTATTGAGCTTAAGAACGGCAGTGTTGTCCACGGTACAATCACCGGCGTCGATGTAGCTATGAACACACATTTAAAGGCTGTTAAAGTTACATTGAAAAACAAAGAGGAACTACAGTTAGAAACACTTAGTATACGTGGAAACAATATTAGATATTTCCTGCTTCCAGACAGTTTACCTTTAGAGACATTATTAATAGACGATGCTCCTAAAGGTAAGGGCAAACGGGAAGGTTTCGCCAGAGGTGGCACTAGAGGAGGAAGGGGCCGAGGCAGAGGCGGCCGTGGAGGTCCTAGAGGTGGGAGAGGCGGCAGAGGTCGTGGCCGTCGATAA
>DPOGS211526-PA
MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNKEELQLETLSIRGNNIRYFLLPDSLPLETLLIDDAPKGKGKREGFARGGTRGGRGRGRGGRGGPRGGRGGRGRGRR-