DPOGS211564 | ||
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Transcript | DPOGS211564-TA | 702 bp |
Protein | DPOGS211564-PA | 233 aa |
Genomic position | DPSCF300084 - 504172-505672 | |
RNAseq coverage | 146x (Rank: top 54%) |
Annotation | ||||
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Heliconius | HMEL016999 | 3e-121 | 94.57% |   |
Bombyx | BGIBMGA006362-TA | 1e-118 | 92.76% |   |
Drosophila | MED4-PA | 2e-50 | 48.74% |   |
EBI UniRef50 | UniRef50_Q9VS38 | 2e-48 | 48.74% | Mediator of RNA polymerase II transcription subunit 4 n=34 Tax=Pancrustacea RepID=MED4_DROME |
NCBI RefSeq | XP_002424448.1 | 4e-77 | 64.89% | mediator complex subunit, putative [Pediculus humanus corporis] |
NCBI nr blastp | gi|242007236 | 6e-76 | 64.89% | mediator complex subunit, putative [Pediculus humanus corporis] |
NCBI nr blastx | gi|242007236 | 7e-79 | 66.39% | mediator complex subunit, putative [Pediculus humanus corporis] |
Group | ||||
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Gene Ontology | GO:0006357 | 2.3e-35 | regulation of transcription from RNA polymerase II promoter | |
GO:0016592 | 2.3e-35 | mediator complex | ||
GO:0001104 | 2.3e-35 | RNA polymerase II transcription cofactor activity | ||
KEGG pathway |   | |||
InterPro domain | [27-154] IPR019258 | 2.3e-35 | Mediator complex, subunit Med4 | |
Orthology group | MCL13638 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS211564-TA
ATGGAGCTTATAGCAAAAGAAATCATTGAGGTATCTATAGCACCGAAAACACAGAAGCTGTCTGCGGCAGATCACGCTCAACTAACGGACCTGCTACTTTCTAAAGATGTAGAGTTAAAGAAATCTTTAGAGTTAGCTGATGAGCAGGCGAATATACAACAGAAAATGAATGAACTCAAGGCTGAAGTAGATAATAAGGACCAAGATATTCACCATTTGCAAAGACAACTTAAAGATGCTGAACAAATTTTAGCAACCTCCCTTTACCAAGCTCGACAGAAACTTGCTTCAATTGTCAAATCAAGAAAAAGGCCTGTACCTTCTGAGGAATTAATTAAATTTGCACACAGGATAAGTGCTTCAAATGCAGTGAGTGCCCCACTATCCTGGCAGCCAGGAGATCCTCGCCGACCTTACCCCACAGACTTAGAGATGAGACTGGGAATGCTTGGGCGACTGTGTGATCTACCTCTTAATGGGCACACTCCCTCCACTCTGAATGATCTTCACAGAATAACCACTGGTGGAGTTCCAGCATCAGCAACAAATCAGTTTACATGGCATCCATCAGGAGAATTGCATATGTCGGTTGGAGGTGGAAACTCGGTAGCCATTGATGGACGAAATAAAGAACCGAATCAGGAAGATGTTGAGGTCATGTCGACAGATTCCAGTTCGAGTTCCAGCAGTGATTCGCAATGA
>DPOGS211564-PA
MELIAKEIIEVSIAPKTQKLSAADHAQLTDLLLSKDVELKKSLELADEQANIQQKMNELKAEVDNKDQDIHHLQRQLKDAEQILATSLYQARQKLASIVKSRKRPVPSEELIKFAHRISASNAVSAPLSWQPGDPRRPYPTDLEMRLGMLGRLCDLPLNGHTPSTLNDLHRITTGGVPASATNQFTWHPSGELHMSVGGGNSVAIDGRNKEPNQEDVEVMSTDSSSSSSSDSQ-