DPOGS211637 | ||
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Transcript | DPOGS211637-TA | 354 bp |
Protein | DPOGS211637-PA | 117 aa |
Genomic position | DPSCF300325 - 40758-41111 | |
RNAseq coverage | 3834x (Rank: top 3%) |
Annotation | ||||
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Heliconius | HMEL006641 | 2e-64 | 98.29% |   |
Bombyx | BGIBMGA011783-TA | 4e-63 | 97.41% |   |
Drosophila | Atg8a-PA | 1e-60 | 91.38% |   |
EBI UniRef50 | UniRef50_UPI0001D54139 | 5e-56 | 88.79% | UPI0001D54139 related cluster n=3 Tax=unknown RepID=UPI0001D54139 |
NCBI RefSeq | NP_001040244.1 | 1e-61 | 97.41% | autophagy related protein Atg8 [Bombyx mori] |
NCBI nr blastp | gi|301015887 | 3e-60 | 97.41% | Chain B, Crystal Structure Of Autophagy-Related Protein Atg8 From The Silkworm Bombyx Mori |
NCBI nr blastx | gi|301015887 | 1e-60 | 97.41% | Chain B, Crystal Structure Of Autophagy-Related Protein Atg8 From The Silkworm Bombyx Mori |
Group | ||||
---|---|---|---|---|
KEGG pathway | tca:661847 | 4e-59 |   | |
  | K08341 (GABARAP, ATG8, LC3) | maps-> | Regulation of autophagy | |
InterPro domain | [2-116] IPR004241 | 1.8e-84 | Light chain 3 (LC3) | |
Orthology group | MCL15691 |   | Multiple-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS211637-TA
ATGAAATTTCAATATAAAGAAGAACACTCTTTCGAGAAAAGAAAGACTGAAGGAGAAAAAATACGCAGGAAATATCCGGATAGAGTCCCAGTGGTTGTAGAGAAAGCGCCTAAAGCCAGGCTTGGTAACCTTGATAAAAAGAAATACTTGGTACCATCGGACTTGACTGTTGGCCAATTTTACTTTTTAATCCGAAAACGGATTCACTTGCGCCCGGAAGATGCGCTGTTTTTCTTCGTTAACAACGTAATACCACCAACTTCCGCGACAATGGGTTCGCTATACCAGGAACACCACGACGAAGATTTCTTCCTATACATTGCCTTTTCCGATGAAAATGTTTACGGATATTAA
>DPOGS211637-PA
MKFQYKEEHSFEKRKTEGEKIRRKYPDRVPVVVEKAPKARLGNLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGY-