DPOGS211846 | ||
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Transcript | DPOGS211846-TA | 540 bp |
Protein | DPOGS211846-PA | 179 aa |
Genomic position | DPSCF300011 - 1340348-1340887 | |
RNAseq coverage | 620x (Rank: top 21%) |
Annotation | ||||
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Heliconius | HMEL018050 | 2e-101 | 94.41% |   |
Bombyx | BGIBMGA000925-TA | 4e-100 | 93.85% |   |
Drosophila | CG14216-PA | 8e-69 | 65.92% |   |
EBI UniRef50 | UniRef50_B4H4R4 | 3e-62 | 61.93% | GL18262 n=19 Tax=Pancrustacea RepID=B4H4R4_DROPE |
NCBI RefSeq | NP_001040442.1 | 2e-98 | 93.30% | Ssu72 RNA polymerase II CTD phosphatase [Bombyx mori] |
NCBI nr blastp | gi|114052000 | 2e-97 | 93.30% | Ssu72 RNA polymerase II CTD phosphatase [Bombyx mori] |
NCBI nr blastx | gi|221579697 | 4e-96 | 93.30% | Ssu72 domain protein [Bombyx mori] |
Group | ||||
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Gene Ontology | GO:0006397 | 8.1e-120 | mRNA processing | |
GO:0005634 | 8.1e-120 | nucleus | ||
GO:0004721 | 8.1e-120 | phosphoprotein phosphatase activity | ||
KEGG pathway |   | |||
InterPro domain | [1-179] IPR006811 | 8.1e-120 | RNA polymerase II subunit A | |
Orthology group | MCL15301 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS211846-TA
ATGAATAGGAGTATGGAAGCACATGCTTTCTTAGCCAAAAAAGGTTTCAAAGTGAAATCTTACGGGACCGGAGAGAAAGTGAAGTTGCCCGGTGCATCCGCAGACCGACCTAATTGTTATGAATTCGGTGTTCCCTACGACGATATATACAATGATCTGTTAGAAAAAGACAAGGCTTATTATACCCAGAATGGTCTGTTACACATGTTAGATAGGAATCGAAGAATAAAACCTTGCCCAGAGAAGTTCCAAGTGTCAACAGAGCGTTTCGATGTCATAATAACATGTGAAGAAAGAGTTTACGATCAAGTCATAGAATGGTTCGGATCCAAGAGGTCTGTTTACAACCAACCCGTACACGTTGTGAATGTGGACATTCAAGACAATCACGAGGAAGCCACTATAGGAGCTTTCCTGATAAGCGACATGGTCACTAAGATGGCTCAGAGTGACGACTTAGACAATGACATTGACGAGTTACTTCATGAATTTGAATCCAAGTGCCACCGACCCATTCTGAACTGTATCATGTTTTATTAA
>DPOGS211846-PA
MNRSMEAHAFLAKKGFKVKSYGTGEKVKLPGASADRPNCYEFGVPYDDIYNDLLEKDKAYYTQNGLLHMLDRNRRIKPCPEKFQVSTERFDVIITCEERVYDQVIEWFGSKRSVYNQPVHVVNVDIQDNHEEATIGAFLISDMVTKMAQSDDLDNDIDELLHEFESKCHRPILNCIMFY-