DPOGS211860 | ||
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Transcript | DPOGS211860-TA | 420 bp |
Protein | DPOGS211860-PA | 139 aa |
Genomic position | DPSCF300011 - 1152388-1154298 | |
RNAseq coverage | 1985x (Rank: top 6%) |
Annotation | ||||
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Heliconius | HMEL017734 | 4e-61 | 99.09% |   |
Bombyx | BGIBMGA001232-TA | 5e-61 | 90.83% |   |
Drosophila | Roc1a-PB | 2e-48 | 72.93% |   |
EBI UniRef50 | UniRef50_UPI00022B5258 | 3e-51 | 88.18% | UPI00022B5258 related cluster n=1 Tax=unknown RepID=UPI00022B5258 |
NCBI RefSeq | NP_001040275.1 | 3e-59 | 98.18% | ring box protein [Bombyx mori] |
NCBI nr blastp | gi|114052775 | 8e-58 | 98.18% | ring box protein [Bombyx mori] |
NCBI nr blastx | gi|114052775 | 3e-61 | 98.18% | ring box protein [Bombyx mori] |
Group | ||||
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KEGG pathway | tca:655935 | 3e-55 |   | |
  | K03868 (RBX1, ROC1) | maps-> | Ubiquitin mediated proteolysis | |
  |   |   | Cell cycle - yeast | |
  |   |   | Circadian rhythm - mammal | |
  |   |   | Nucleotide excision repair | |
  |   |   | Renal cell carcinoma | |
  |   |   | Pathways in cancer | |
  |   |   | Wnt signaling pathway | |
  |   |   | TGF-beta signaling pathway | |
  |   |   | Cell cycle | |
  |   |   | Protein processing in endoplasmic reticulum | |
  |   |   | Oocyte meiosis | |
InterPro domain | [26-110] IPR013083 | 5.7e-24 | Zinc finger, RING/FYVE/PHD-type | |
Orthology group | MCL15309 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS211860-TA
ATGGCTACAGCAATGGACGTAGATGAAGAAGAAGTCGAAATGGCTTCGTCGAGCAGTGGCAAAGGCGACAAAAAAAGATTCGAAGTTAAAAAGTGGAATGCAGTAGCGTTGTGGGCTTGGGATATCGTGGTGGACAACTGTGCTATTTGCCGCAACCACATCATGGACCTGTGTATAGAGTGTCAAGCTAATCAAGCGTCTGCTACTAGTGAAGAATGCACAGTGGCTTGGGGAGTTTGCAATCATGCTTTTCATTTCCACTGCATCTCTCGTTGGCTAAAAACAAGACAAGTGTGTCCTCTCGACAATAGAGAATGGGAATTCCAAAAGCCGGAATTACTTTATAAGAGGTCGCACTATCCTTCCACAGTGGATGGTAGCGTCGCACGTGACGCCGCTTCCTGTCTTCCTGTGTCTTAA
>DPOGS211860-PA
MATAMDVDEEEVEMASSSSGKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKPELLYKRSHYPSTVDGSVARDAASCLPVS-