DPOGS211966 | ||
---|---|---|
Transcript | DPOGS211966-TA | 489 bp |
Protein | DPOGS211966-PA | 162 aa |
Genomic position | DPSCF300011 + 1141296-1141784 | |
RNAseq coverage | 2105x (Rank: top 6%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL017731 | 2e-89 | 97.53% |   |
Bombyx | BGIBMGA000918-TA | 3e-88 | 96.91% |   |
Drosophila | skpA-PB | 4e-76 | 83.95% |   |
EBI UniRef50 | UniRef50_P63208 | 9e-68 | 86.50% | S-phase kinase-associated protein 1 n=185 Tax=Eukaryota RepID=SKP1_HUMAN |
NCBI RefSeq | NP_001040518.1 | 9e-87 | 96.91% | S-phase kinase-associated protein [Bombyx mori] |
NCBI nr blastp | gi|114052370 | 1e-85 | 96.91% | S-phase kinase-associated protein [Bombyx mori] |
NCBI nr blastx | gi|114052370 | 9e-87 | 96.91% | S-phase kinase-associated protein [Bombyx mori] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0006511 | 7e-105 | ubiquitin-dependent protein catabolic process | |
KEGG pathway | cqu:CpipJ_CPIJ009705 | 3e-81 |   | |
  | K03094 (SKP1, CBF3D) | maps-> | Ubiquitin mediated proteolysis | |
  |   |   | Wnt signaling pathway | |
  |   |   | Cell cycle - yeast | |
  |   |   | TGF-beta signaling pathway | |
  |   |   | Circadian rhythm - mammal | |
  |   |   | Protein processing in endoplasmic reticulum | |
  |   |   | Cell cycle | |
  |   |   | Oocyte meiosis | |
InterPro domain | [1-162] IPR001232 | 7e-105 | SKP1 component | |
[2-161] IPR011333 | 2.6e-78 | BTB/POZ fold | ||
[1-162] IPR016897 | 1e-76 | E3 ubiquitin ligase, SCF complex, Skp subunit | ||
[84-161] IPR016072 | 2e-40 | SKP1 component, dimerisation | ||
[3-66] IPR016073 | 1.3e-25 | SKP1 component, POZ | ||
Orthology group | MCL14333 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS211966-TA
ATGCCAAATATCAAACTACAATCTTCCGATAACGAAATTTTTGATGTTGACGTCGAAATAGCAAAATGTTCTGTCACGATAAAAACCATGTTGGAAGATCTTGGCATGGACGATGATGAAGAAGAAGTGGTTCCTCTACCCAACGTGAACTCCGCTATCCTCAAGAAGGTCATCCAATGGGCTACTTACCACAAAGACGACCCTCCACTACCCGAAGACGATGAAAACAAAGAAAAACGCACCGATGACATTTCGTCCTGGGATGCAGACTTTCTCAAAGTAGATCAGGGGACTCTGTTCGAATTAATACTGGCTGCGAATTATTTAGATATTAAGGGGCTTCTGGATGTCACATGTAAAACTGTAGCAAATATGATTAAGGGCAAGACTCCGGAAGAGATTCGTAAAACGTTCAATATCAAAAACGATTTCACAGCTGCCGAAGAGGAACAAGTCCGTAAAGAAAACGAATGGTGCGAGGAGAAATAA
>DPOGS211966-PA
MPNIKLQSSDNEIFDVDVEIAKCSVTIKTMLEDLGMDDDEEEVVPLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEEQVRKENEWCEEK-