| DPOGS211966 | ||
|---|---|---|
| Transcript | DPOGS211966-TA | 489 bp |
| Protein | DPOGS211966-PA | 162 aa |
| Genomic position | DPSCF300011 + 1141296-1141784 | |
| RNAseq coverage | 2105x (Rank: top 6%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL017731 | 2e-89 | 97.53% | |
| Bombyx | BGIBMGA000918-TA | 3e-88 | 96.91% | |
| Drosophila | skpA-PB | 4e-76 | 83.95% | |
| EBI UniRef50 | UniRef50_P63208 | 9e-68 | 86.50% | S-phase kinase-associated protein 1 n=185 Tax=Eukaryota RepID=SKP1_HUMAN |
| NCBI RefSeq | NP_001040518.1 | 9e-87 | 96.91% | S-phase kinase-associated protein [Bombyx mori] |
| NCBI nr blastp | gi|114052370 | 1e-85 | 96.91% | S-phase kinase-associated protein [Bombyx mori] |
| NCBI nr blastx | gi|114052370 | 9e-87 | 96.91% | S-phase kinase-associated protein [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0006511 | 7e-105 | ubiquitin-dependent protein catabolic process | |
| KEGG pathway | cqu:CpipJ_CPIJ009705 | 3e-81 | ||
| K03094 (SKP1, CBF3D) | maps-> | Ubiquitin mediated proteolysis | ||
| Wnt signaling pathway | ||||
| Cell cycle - yeast | ||||
| TGF-beta signaling pathway | ||||
| Circadian rhythm - mammal | ||||
| Protein processing in endoplasmic reticulum | ||||
| Cell cycle | ||||
| Oocyte meiosis | ||||
| InterPro domain | [1-162] IPR001232 | 7e-105 | SKP1 component | |
| [2-161] IPR011333 | 2.6e-78 | BTB/POZ fold | ||
| [1-162] IPR016897 | 1e-76 | E3 ubiquitin ligase, SCF complex, Skp subunit | ||
| [84-161] IPR016072 | 2e-40 | SKP1 component, dimerisation | ||
| [3-66] IPR016073 | 1.3e-25 | SKP1 component, POZ | ||
| Orthology group | MCL14333 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS211966-TA
ATGCCAAATATCAAACTACAATCTTCCGATAACGAAATTTTTGATGTTGACGTCGAAATAGCAAAATGTTCTGTCACGATAAAAACCATGTTGGAAGATCTTGGCATGGACGATGATGAAGAAGAAGTGGTTCCTCTACCCAACGTGAACTCCGCTATCCTCAAGAAGGTCATCCAATGGGCTACTTACCACAAAGACGACCCTCCACTACCCGAAGACGATGAAAACAAAGAAAAACGCACCGATGACATTTCGTCCTGGGATGCAGACTTTCTCAAAGTAGATCAGGGGACTCTGTTCGAATTAATACTGGCTGCGAATTATTTAGATATTAAGGGGCTTCTGGATGTCACATGTAAAACTGTAGCAAATATGATTAAGGGCAAGACTCCGGAAGAGATTCGTAAAACGTTCAATATCAAAAACGATTTCACAGCTGCCGAAGAGGAACAAGTCCGTAAAGAAAACGAATGGTGCGAGGAGAAATAA
>DPOGS211966-PA
MPNIKLQSSDNEIFDVDVEIAKCSVTIKTMLEDLGMDDDEEEVVPLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEEQVRKENEWCEEK-