| DPOGS212404 | ||
|---|---|---|
| Transcript | DPOGS212404-TA | 723 bp |
| Protein | DPOGS212404-PA | 240 aa |
| Genomic position | DPSCF300258 - 267242-273896 | |
| RNAseq coverage | 443x (Rank: top 28%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL010953 | 2e-101 | 75.10% | |
| Bombyx | BGIBMGA002798-TA | 1e-109 | 76.45% | |
| Drosophila | CG9027-PD | 1e-25 | 39.35% | |
| EBI UniRef50 | UniRef50_D6X0S3 | 1e-45 | 45.74% | Superoxide dismutase [Cu-Zn] n=1 Tax=Tribolium castaneum RepID=D6X0S3_TRICA |
| NCBI RefSeq | XP_972244.1 | 3e-46 | 45.74% | PREDICTED: similar to copper-zinc superoxide dismutase [Tribolium castaneum] |
| NCBI nr blastp | gi|91091194 | 5e-45 | 45.74% | PREDICTED: similar to copper-zinc superoxide dismutase [Tribolium castaneum] |
| NCBI nr blastx | gi|91091194 | 5e-47 | 46.15% | PREDICTED: similar to copper-zinc superoxide dismutase [Tribolium castaneum] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0004784 | 6.7e-46 | superoxide dismutase activity | |
| GO:0055114 | 6.7e-46 | oxidation-reduction process | ||
| GO:0006801 | 3e-43 | superoxide metabolic process | ||
| GO:0046872 | 3e-43 | metal ion binding | ||
| KEGG pathway | tca:660957 | 7e-46 | ||
| K04565 (E1.15.1.1C, sodC, SOD1) | maps-> | Huntington's disease | ||
| Peroxisome | ||||
| Amyotrophic lateral sclerosis (ALS) | ||||
| Prion diseases | ||||
| InterPro domain | [88-237] IPR024134 | 6.7e-46 | Superoxide dismutase (Cu/Zn) / chaperones | |
| [88-237] IPR024136 | 6.7e-46 | Superoxide dismutase, Cu/Zn | ||
| [93-238] IPR001424 | 3e-43 | Superoxide dismutase, copper/zinc binding domain | ||
| Orthology group | MCL19018 | Insect specific | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS212404-TA
ATGAACTTGAGGCTGCACATATTTCTCAGCCAGTTCTTGTGGCTTGTGTCCGTGCTGAAAGGGAAAAGTCTACAAGGCATACCGGGTTACGGCAGGAATTTATTGATCAAAACGATACCCGCTGTAGAAGACTACCAGAGCAATGTTTACGAAGTATTCATGGAGCCGTACTTATATGAACTTGGTACAACCTACCCACTAGACGGAGACCGCTCACAGAAACAGATCCAAATACCCATTGGACCACAGCCAATTCCCGGAATCCAAGCCATAGTTCACCTCCAAGACGATGAAGAATCCGGCGTGGAGGGAGATTTAGTATTCACGCAGTTAGTTCCAAACGGACCAGTGTCCATCGAGGGAAACATTACAGGACTGTCCCCGGGACTTCACGGACTACACGTACACCAGACTGGCGATGTTGATGACAATTGCAAAAAGATTGGTCCCCATTTTATTGCTTATTACGGGCGTCATGGAGGACCGCGGGACGCCGTCCGCCATGTTGGCGATCTTGGTAACATAAAAGCCGAAGAAGGCACTTTAGATGTCAAAATAGTCGACCACCTCATATCACTTACCGGCCCGAGGTCTATCGTTGGCCGTTCATTAGCTATAAGCAAAAGTGAAGACGACTATGGAAGGTCCAGTACTGAGGATAGCGCCCTAACCGGCACCTCGGGTCCTGCTATAGCCTGCGGCATTATCGGCTATCTTAATTAA
>DPOGS212404-PA
MNLRLHIFLSQFLWLVSVLKGKSLQGIPGYGRNLLIKTIPAVEDYQSNVYEVFMEPYLYELGTTYPLDGDRSQKQIQIPIGPQPIPGIQAIVHLQDDEESGVEGDLVFTQLVPNGPVSIEGNITGLSPGLHGLHVHQTGDVDDNCKKIGPHFIAYYGRHGGPRDAVRHVGDLGNIKAEEGTLDVKIVDHLISLTGPRSIVGRSLAISKSEDDYGRSSTEDSALTGTSGPAIACGIIGYLN-