DPOGS212409 | ||
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Transcript | DPOGS212409-TA | 348 bp |
Protein | DPOGS212409-PA | 115 aa |
Genomic position | DPSCF300258 - 149740-150242 | |
RNAseq coverage | 759x (Rank: top 17%) |
Annotation | ||||
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Heliconius | HMEL021726 | 2e-54 | 85.09% |   |
Bombyx | BGIBMGA002809-TA | 2e-26 | 70.59% |   |
Drosophila | MED9-PC | 2e-24 | 48.91% |   |
EBI UniRef50 | UniRef50_E2AT38 | 4e-26 | 65.62% | Mediator of RNA polymerase II transcription subunit 9 n=3 Tax=Formicidae RepID=E2AT38_CAMFO |
NCBI RefSeq | XP_970747.1 | 3e-31 | 56.25% | PREDICTED: similar to mediator complex, subunit, putative [Tribolium castaneum] |
NCBI nr blastp | gi|91090101 | 9e-30 | 56.25% | PREDICTED: similar to mediator complex, subunit, putative [Tribolium castaneum] |
NCBI nr blastx | gi|383849481 | 8e-30 | 63.64% | PREDICTED: mediator of RNA polymerase II transcription subunit 9-like [Megachile rotundata] |
Group | ||||
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Gene Ontology | GO:0006357 | 3.2e-12 | regulation of transcription from RNA polymerase II promoter | |
GO:0016592 | 3.2e-12 | mediator complex | ||
GO:0001104 | 3.2e-12 | RNA polymerase II transcription cofactor activity | ||
KEGG pathway |   | |||
InterPro domain | [43-108] IPR011425 | 3.2e-12 | Mediator complex, subunit Med9 | |
Orthology group | MCL14329 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS212409-TA
ATGGATAACACAGACCACTCCGAACAAAACAATTTCAGTCCTCTCACTGTCCAAGAAGTAGACGTAGATTTTTTACCGATTGTGTACGAAATCATACGAAGTGTTGAACGAGACTTCCACGATAATTCCGCTAAAGTACGAGAATCCCAGGATTGCAGTTTGAAAGTATTAGAGTTACAGAGGAAATTCGACGTCGCTCGTTCTCAAATTAAGCGGTTGCCAGGAATTGAATACAATAAACAAGATCAGTTGAAGCAATTCGAGATTCTCAGTACTCAACTGCGACTGAAGAGAGAGTTGTTACAGAGATACCGTAATATGTGCTCTTTTGAAACATCATTCAAGTGA
>DPOGS212409-PA
MDNTDHSEQNNFSPLTVQEVDVDFLPIVYEIIRSVERDFHDNSAKVRESQDCSLKVLELQRKFDVARSQIKRLPGIEYNKQDQLKQFEILSTQLRLKRELLQRYRNMCSFETSFK-