| DPOGS213115 | ||
|---|---|---|
| Transcript | DPOGS213115-TA | 669 bp |
| Protein | DPOGS213115-PA | 222 aa |
| Genomic position | DPSCF300016 + 298195-301413 | |
| RNAseq coverage | 121x (Rank: top 57%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL009786 | 1e-125 | 96.85% | |
| Bombyx | BGIBMGA007877-TA | 3e-118 | 80.90% | |
| Drosophila | MED18-PA | 4e-75 | 64.02% | |
| EBI UniRef50 | UniRef50_E2B791 | 6e-87 | 71.49% | Mediator of RNA polymerase II transcription subunit 18 n=4 Tax=Arthropoda RepID=E2B791_HARSA |
| NCBI RefSeq | XP_392263.1 | 4e-90 | 72.60% | PREDICTED: similar to Mediator complex subunit 18 CG14802-PA, isoform A [Apis mellifera] |
| NCBI nr blastp | gi|383852250 | 1e-89 | 73.52% | PREDICTED: mediator of RNA polymerase II transcription subunit 18-like [Megachile rotundata] |
| NCBI nr blastx | gi|307187927 | 2e-85 | 73.30% | Mediator of RNA polymerase II transcription subunit 18 [Camponotus floridanus] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0006357 | 1.6e-25 | regulation of transcription from RNA polymerase II promoter | |
| GO:0016592 | 1.6e-25 | mediator complex | ||
| GO:0001104 | 1.6e-25 | RNA polymerase II transcription cofactor activity | ||
| KEGG pathway | ||||
| InterPro domain | [92-214] IPR019095 | 1.6e-25 | Mediator complex, subunit Med18, metazoa/fungi | |
| Orthology group | MCL13769 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS213115-TA
ATGTCTGTTAACGCACCTCCTATTACGGCAACTGATAGCCTTTCACAAGCGCTTAAGGCAAATATTATACCAAACCAAGAATATTTATTACAGGGTTCTGTGTTGGACTCGGCGGTAGAGGTATTACTTCATCGTCTCCGCGGTTTATGTGACAACGTCGATGCCGGTCCTGAAACGTTCGATGATCAGGAAGTTTGTTTTAGTTTACGAGATCCTAATCAACAGGCAGCACCTCTCATGTTACGAGTACGGAAAGCTCTTGATGCAAGGGATATGCCGTTCCAGTTGCGATATATAGGCCAGCCTGATCTGGGCGATAAGAATAGACCGACAGTTGTGCGCTCCAGCCTTGATATAGCCTGCAGCGGCATGTTGATAGAGTTCCTCAATGAACTAGGATGCAGAATTGAATTTGAATACAGTGTTAAAGGTTATATGTTCAGGAAAGGGAGGATGAAGATAACAGTTGCGAAGGTGTTCAAGATATCACAGAGTTCAATGCCCCCGGAGCCGATATCACAGAGCTATCTGGTGGAGCTATCGGTTTTGGCACCTCAAGGACAGGACGCTATCGGTGAAGACATGAGGGCGTTCGCTGATCAATTGCGACCTCTGGTACAATTGGACAAGATTGATTACAAACGACTCGGTCACATGTCGGTTACATAG
>DPOGS213115-PA
MSVNAPPITATDSLSQALKANIIPNQEYLLQGSVLDSAVEVLLHRLRGLCDNVDAGPETFDDQEVCFSLRDPNQQAAPLMLRVRKALDARDMPFQLRYIGQPDLGDKNRPTVVRSSLDIACSGMLIEFLNELGCRIEFEYSVKGYMFRKGRMKITVAKVFKISQSSMPPEPISQSYLVELSVLAPQGQDAIGEDMRAFADQLRPLVQLDKIDYKRLGHMSVT-