| DPOGS213678 | ||
|---|---|---|
| Transcript | DPOGS213678-TA | 354 bp |
| Protein | DPOGS213678-PA | 117 aa |
| Genomic position | DPSCF300219 - 187459-188060 | |
| RNAseq coverage | 2778x (Rank: top 4%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL010758 | 1e-45 | 67.52% | |
| Bombyx | BGIBMGA010351-TA | 9e-39 | 61.54% | |
| Drosophila | CG12400-PA | 2e-23 | 48.31% | |
| EBI UniRef50 | UniRef50_Q9VQM2 | 4e-21 | 48.31% | NADH dehydrogenase [ubiquinone] 1 subunit C2 n=11 Tax=Drosophila RepID=Q9VQM2_DROME |
| NCBI RefSeq | XP_002087786.1 | 9e-23 | 50.42% | GE14937 [Drosophila yakuba] |
| NCBI nr blastp | gi|195470985 | 2e-21 | 50.42% | GE14937 [Drosophila yakuba] |
| NCBI nr blastx | gi|195470985 | 7e-21 | 50.42% | GE14937 [Drosophila yakuba] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0006120 | 1.7e-30 | mitochondrial electron transport, NADH to ubiquinone | |
| GO:0005743 | 1.7e-30 | mitochondrial inner membrane | ||
| GO:0008137 | 1.7e-30 | NADH dehydrogenase (ubiquinone) activity | ||
| KEGG pathway | dya:Dyak_GE14937 | 3e-22 | ||
| K03968 (NDUFC2) | maps-> | Huntington's disease | ||
| Oxidative phosphorylation | ||||
| Alzheimer's disease | ||||
| Parkinson's disease | ||||
| InterPro domain | [4-117] IPR009423 | 1.7e-30 | NADH:ubiquinone oxidoreductase, subunit b14.5b | |
| Orthology group | MCL13953 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS213678-TA
ATGTCGTCTCAAATGACTGCTTTAGAATTATTAAAACTTGGTGATCAAGGAAGAGAAGCACCCGTTTTAAATAAATATTGGCCTTATATTCTAGGAGCCGTCTTCGGAGTAGGAACAGGCATTACGCTTAACTTGTGTACTAGACGTCCAATATGGAGCGGTATACAAAAGCATATTCTTGGCGTAGCTGGTTGGACTGCTACTCTAAACTACGCTCAAAACAAACGTAATGCATATTATGCCGAAAAAGATGCAGTTCTAAGACATTATATTGAATTACACCCTGAAGATTTCCCAGAGCCAGAAAGAAAAAAAATTGGAGACCTTTTGGAAGACTGGATCCCTATACGCTAA
>DPOGS213678-PA
MSSQMTALELLKLGDQGREAPVLNKYWPYILGAVFGVGTGITLNLCTRRPIWSGIQKHILGVAGWTATLNYAQNKRNAYYAEKDAVLRHYIELHPEDFPEPERKKIGDLLEDWIPIR-