DPOGS213780 | ||
---|---|---|
Transcript | DPOGS213780-TA | 861 bp |
Protein | DPOGS213780-PA | 286 aa |
Genomic position | DPSCF300212 + 484128-486779 | |
RNAseq coverage | 407x (Rank: top 30%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL002264 | 2e-49 | 49.64% |   |
Bombyx | BGIBMGA009265-TA | 1e-119 | 74.83% |   |
Drosophila | Nf-YA-PA | 2e-23 | 70.27% |   |
EBI UniRef50 | UniRef50_D1ZZH5 | 6e-46 | 45.88% | Putative uncharacterized protein GLEAN_07453 n=1 Tax=Tribolium castaneum RepID=D1ZZH5_TRICA |
NCBI RefSeq | XP_972706.2 | 1e-46 | 45.88% | PREDICTED: similar to nuclear transcription factor Y, alpha like [Tribolium castaneum] |
NCBI nr blastp | gi|189236433 | 2e-45 | 45.88% | PREDICTED: similar to nuclear transcription factor Y, alpha like [Tribolium castaneum] |
NCBI nr blastx | gi|189236433 | 1e-49 | 46.18% | PREDICTED: similar to nuclear transcription factor Y, alpha like [Tribolium castaneum] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0005634 | 1.7e-32 | nucleus | |
GO:0006355 | 1.7e-32 | regulation of transcription, DNA-dependent | ||
GO:0003700 | 1.7e-32 | sequence-specific DNA binding transcription factor activity | ||
KEGG pathway | tca:661458 | 3e-46 |   | |
  | K08064 (NFYA) | maps-> | Antigen processing and presentation | |
InterPro domain | [4-274] IPR001289 | 1.7e-32 | CCAAT-binding transcription factor, subunit B | |
Orthology group | MCL16307 |   | Patchy |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS213780-TA
ATGGAGCATGCACAGATCCAAACGTCAGATGGTACACAAGTGATGACCATCAATGGGCAACAGCTGCAAGTGCTGCAAATGAACAACAGTCCCCACATGATTCAAGGTCCTAATGGACAACAAATAGTCATACATGCTATACCATCAACAGCACCGACCATACAGGTGGCAACCCCGACTGGTCAGCAATTACAGCAACTACAAGTACTACCACTATCTAGTTTACAAGGTACAAGCAACAATATACAGCCGATGCAGTTAGTTCAGACTCCTGACGGACAAACATACATCTATCAACCCACAGCAAGCGCACCACAACCACAGATTGACCAACATCAGATTATACACCAACCCGGCACCCTATTGAACTTGAATGGAAATTTACTACAAGTGGCAGGTGTTGGCGGAGTACAACCACAACAAATTGTCAATCAGCCGAACATAGTCATGATGGTAAATGGCAACACAGCCTCATCGAGCGAAGGGGCCACATCCACAGCGGGGTCTGACGAGGAGCCGTTACTGTATGTCAACGCCAGGCAATACAAACGTATACTGAAGAGACGAGCAGCTAGGGCTAAATTACACGAACAAGGGAAAATACCTAAAGAAAGACCTAAATATCTTCATGAGTCGAGACACAGGCACGCCATGAACAGGATAAGAGGTGAAGGTGGGAGATTTAATTCCGGCAGCAGGAAGAATATGGAACAACAGGAACAGAATACGTCCACCCAGGCTATATTGGATGACATCAAGCCCGATACAGTCTCTATAACAATAATTCAGGATGAAGAATTACAAGAGACCCAAACGAATCAATGGCGAAGACTGGCCCCACAACCGATGACATCGACATAG
>DPOGS213780-PA
MEHAQIQTSDGTQVMTINGQQLQVLQMNNSPHMIQGPNGQQIVIHAIPSTAPTIQVATPTGQQLQQLQVLPLSSLQGTSNNIQPMQLVQTPDGQTYIYQPTASAPQPQIDQHQIIHQPGTLLNLNGNLLQVAGVGGVQPQQIVNQPNIVMMVNGNTASSSEGATSTAGSDEEPLLYVNARQYKRILKRRAARAKLHEQGKIPKERPKYLHESRHRHAMNRIRGEGGRFNSGSRKNMEQQEQNTSTQAILDDIKPDTVSITIIQDEELQETQTNQWRRLAPQPMTST-