DPOGS213926 | ||
---|---|---|
Transcript | DPOGS213926-TA | 570 bp |
Protein | DPOGS213926-PA | 189 aa |
Genomic position | DPSCF300218 + 318792-319361 | |
RNAseq coverage | 143x (Rank: top 54%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL006061 | 2e-76 | 69.23% |   |
Bombyx | BGIBMGA004630-TA | 1e-74 | 69.11% |   |
Drosophila | l(2)efl-PA | 1e-41 | 49.42% |   |
EBI UniRef50 | UniRef50_B9VTS8 | 5e-55 | 68.45% | Heat shock protein 22.6 n=8 Tax=Obtectomera RepID=B9VTS8_BOMMO |
NCBI RefSeq | NP_001036984.1 | 2e-61 | 64.29% | heat shock protein hsp 19.9 [Bombyx mori] |
NCBI nr blastp | gi|323541216 | 5e-66 | 69.23% | small heat shock protein 22.2 [Cydia pomonella] |
NCBI nr blastx | gi|323541216 | 1e-67 | 69.74% | small heat shock protein 22.2 [Cydia pomonella] |
Group | ||||
---|---|---|---|---|
KEGG pathway | dme:Dmel_CG4533 | 9e-40 |   | |
  | K09542 (CRYAB) | maps-> | Protein processing in endoplasmic reticulum | |
InterPro domain | [61-155] IPR002068 | 2.2e-30 | Heat shock protein Hsp20 | |
[13-25] IPR001436 | 4.9e-30 | Alpha crystallin/Heat shock protein | ||
[47-155] IPR008978 | 8e-20 | HSP20-like chaperone | ||
Orthology group | MCL25043 |   | Lepidoptera specific |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS213926-TA
ATGGCTTTGCTACCATACTTATTGGATTATGAAATGAGGCCTCGTCGAATTCGCGATCAGCTATTTGGGCTGGATCTGGCACACGATGATTTTCTCTCTGATATCCTGGATAGACCATTGAGGAACTATATGCGTCCGTGGAGAAACCTTTCTAATCTGGCACGGGACGTCGGCAGCACTATTAAAACGGACAAAGACAAGTTCCAAGTGAATTTAGACGTGCAGCATTTTGCACCTGAAGAAATTTCTGTCAAGATAACTGATAACTATGTAGTGGTTGAAGGTCAACACGAGGAGAAGAAAGACGAGCATGGATATATTTCAAGACAGTTTAAACGAAGATATTTGATACCGGAAGGATGTAACAGTGAAGCTGTCGAGTCCAAACTATCTTCAGATGGAGTTCTAACGATCACTGCTCCTAAATTACCTTCAGCTAAAGGTGAGAGGATCATACCCATTTCCCAAACTGGTCCTGTAAGAAGGAAATTAACTGATTCAGAGGACCACCAACCAAATGGAGAAGCAGCTGAAGAGGCGAAGACCCCGCAGAAGAAAAGAAGGCGATAA
>DPOGS213926-PA
MALLPYLLDYEMRPRRIRDQLFGLDLAHDDFLSDILDRPLRNYMRPWRNLSNLARDVGSTIKTDKDKFQVNLDVQHFAPEEISVKITDNYVVVEGQHEEKKDEHGYISRQFKRRYLIPEGCNSEAVESKLSSDGVLTITAPKLPSAKGERIIPISQTGPVRRKLTDSEDHQPNGEAAEEAKTPQKKRRR-