| DPOGS214124 | ||
|---|---|---|
| Transcript | DPOGS214124-TA | 879 bp |
| Protein | DPOGS214124-PA | 292 aa |
| Genomic position | DPSCF300014 - 1573274-1574392 | |
| RNAseq coverage | 742x (Rank: top 17%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL011383 | 3e-137 | 94.86% | |
| Bombyx | BGIBMGA006173-TA | 3e-130 | 89.38% | |
| Drosophila | TfIIS-PA | 5e-110 | 63.61% | |
| EBI UniRef50 | UniRef50_P20232 | 7e-108 | 63.61% | Transcription elongation factor S-II n=14 Tax=Endopterygota RepID=TFS2_DROME |
| NCBI RefSeq | NP_001040406.1 | 1e-128 | 89.38% | transcription elongation factor S-II [Bombyx mori] |
| NCBI nr blastp | gi|114050769 | 2e-127 | 89.38% | transcription elongation factor S-II [Bombyx mori] |
| NCBI nr blastx | gi|114050769 | 7e-148 | 91.78% | transcription elongation factor S-II [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0032784 | 5.8e-136 | regulation of transcription elongation, DNA-dependent | |
| GO:0006357 | 5.8e-136 | regulation of transcription from RNA polymerase II promoter | ||
| GO:0005634 | 5e-88 | nucleus | ||
| GO:0006355 | 5e-88 | regulation of transcription, DNA-dependent | ||
| GO:0003746 | 5e-88 | translation elongation factor activity | ||
| GO:0003676 | 5e-88 | nucleic acid binding | ||
| GO:0006354 | 5e-88 | transcription elongation, DNA-dependent | ||
| GO:0006351 | 1e-41 | transcription, DNA-dependent | ||
| GO:0008270 | 1e-41 | zinc ion binding | ||
| GO:0003677 | 1.1e-28 | DNA binding | ||
| KEGG pathway | ||||
| InterPro domain | [1-292] IPR016492 | 5.8e-136 | Transcription elongation factor, IIS | |
| [5-292] IPR006289 | 5e-88 | Transcription elongation factor, TFIIS | ||
| [129-230] IPR017890 | 1e-41 | Transcription elongation factor S-IIM | ||
| [127-241] IPR003618 | 9.7e-40 | Transcription elongation factor S-II, central domain | ||
| [1-96] IPR017923 | 1.1e-28 | Transcription factor IIS, N-terminal | ||
| [7-83] IPR003617 | 2.1e-21 | Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type | ||
| [252-291] IPR001222 | 2.1e-19 | Zinc finger, TFIIS-type | ||
| Orthology group | MCL11650 | Multiple-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS214124-TA
ATGAGTGTCGAAGAAGATGTAATGAAAATACAAAAAAAATTAACTAAGATGACATCAGATGATGGCACGGGACAAGAGGAAGCTTTGGAGCTATTAAAAGCACTTCAAACTATGGCCATCAATTTGGACGTGCTCACAAAAACCAGGATAGGTATGACTGTAAATGCTCTCCGTAAGTCCAGTAAGGATGAAGAAGTTATATCTCTTTGTAAGACTTTGATAAAGAATTGGAAAAAATTTTTGTCAACACCGACAACACCATCCAAGGATTCCGGCAGCTCCTCTAAACCAAAGAAAGATTCTAATAAGGACAAAGACAAAAAAGAGGAAAGGGAGAAAGACAAAAAATTGCCAGCGTCATTTCCTCCACAGTCAAACACAACCGATGCTGTGAGACTTAAATGTAGGGAGCTCCTTACACAAGCCCTCAAAATTGACGGTGAAAACCCAAATGCTTGCGCCACTCCAGAAGAACTGGCAGAGGATTTGGAGGAATGCATTTATGCAGAGTTTAAGAATACAGATATGCGCTACAAAAACAGGGTCCGTTCAAGGGTAGCTAATTTGAAAGATCCAAAGAATCCAACATTAAGGACCAACTTCTTAAATGGTGTAATTAACGCTGCCCGCCTTGCCAAAATGACACCAGAAGAAATGGCAAGTGATGAAATGAAAAAGTTAAGAGAGAAATTCATCAAAGAAGCCATTGACGATGCACAACTGGCTACTGTACAAGGTACTAAAACAGAGATGCTTAAGTGTGGAAAATGCAAGAAGAAGAATTGCACTTACAACCAGCTTCAAACAAGAAGTTCCGATGAACCCATGACTACATTTGTACTCTGCAATGAATGTGGAAATCGTTGGAAGTTCTGTTAA
>DPOGS214124-PA
MSVEEDVMKIQKKLTKMTSDDGTGQEEALELLKALQTMAINLDVLTKTRIGMTVNALRKSSKDEEVISLCKTLIKNWKKFLSTPTTPSKDSGSSSKPKKDSNKDKDKKEEREKDKKLPASFPPQSNTTDAVRLKCRELLTQALKIDGENPNACATPEELAEDLEECIYAEFKNTDMRYKNRVRSRVANLKDPKNPTLRTNFLNGVINAARLAKMTPEEMASDEMKKLREKFIKEAIDDAQLATVQGTKTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNECGNRWKFC-