DPOGS214810 | ||
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Transcript | DPOGS214810-TA | 267 bp |
Protein | DPOGS214810-PA | 88 aa |
Genomic position | DPSCF300059 + 401803-402302 | |
RNAseq coverage | 1034x (Rank: top 12%) |
Annotation | ||||
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Heliconius | HMEL017291 | 5e-40 | 97.40% |   |
Bombyx | BGIBMGA012045-TA | 4e-39 | 92.31% |   |
Drosophila | SmF-PA | 2e-38 | 78.41% |   |
EBI UniRef50 | UniRef50_Q1HPQ7 | 1e-36 | 92.31% | Small nuclear ribonucleoprotein protein F n=7 Tax=Eukaryota RepID=Q1HPQ7_BOMMO |
NCBI RefSeq | NP_001093276.1 | 2e-37 | 92.31% | small nuclear ribonucleoprotein protein F [Bombyx mori] |
NCBI nr blastp | gi|332031555 | 3e-37 | 82.95% | Small nuclear ribonucleoprotein F [Acromyrmex echinatior] |
NCBI nr blastx | gi|153792507 | 7e-42 | 93.18% | small nuclear ribonucleoprotein protein F [Bombyx mori] |
Group | ||||
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Gene Ontology | GO:0006396 | 4.3e-54 | RNA processing | |
GO:0005634 | 4.3e-54 | nucleus | ||
KEGG pathway | dvi:Dvir_GJ21558 | 2e-36 |   | |
  | K11098 (SNRPF, SMF) | maps-> | Spliceosome | |
InterPro domain | [1-85] IPR016487 | 4.3e-54 | Small nuclear ribonucleoprotein SmF | |
[11-76] IPR006649 | 5.1e-22 | Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | ||
[8-87] IPR010920 | 3.2e-20 | Like-Sm ribonucleoprotein (LSM)-related domain | ||
[12-74] IPR001163 | 9.6e-18 | Like-Sm ribonucleoprotein (LSM) domain | ||
Orthology group | MCL15200 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS214810-TA
ATGGCGGCGTCAATGCCTATAAATCCTAAGCCCTTTTTAAATAGCCTAACAGGAAAGGCTGTATTAGTCAAATTAAAATGGGGACATGAATATAAAGGACTTTTAGTGTCTGCCGACGGTTATATGAATTTGCAGTTAGCAAATACAGAAGAGATTGTCGATGGCTCTTGCACAGGTAATTTGGGAGAAGTTTTAATTAGGTGTAATAATGTGCTGTATGTAAGAGGTGCCGAGGAAGAAGATGAGGAAGGAGAAATGAAAGAATAA
>DPOGS214810-PA
MAASMPINPKPFLNSLTGKAVLVKLKWGHEYKGLLVSADGYMNLQLANTEEIVDGSCTGNLGEVLIRCNNVLYVRGAEEEDEEGEMKE-