| DPOGS215161 | ||
|---|---|---|
| Transcript | DPOGS215161-TA | 357 bp |
| Protein | DPOGS215161-PA | 118 aa |
| Genomic position | DPSCF300539 - 49652-74325 | |
| RNAseq coverage | 3x (Rank: top 91%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL016468 | 6e-09 | 40.58% | |
| Bombyx | % | |||
| Drosophila | % | |||
| EBI UniRef50 | UniRef50_E5SV60 | 1e-10 | 46.38% | Reverse transcriptase family protein n=1 Tax=Trichinella spiralis RepID=E5SV60_TRISP |
| NCBI RefSeq | XP_001193859.1 | 1e-10 | 41.18% | PREDICTED: similar to transposase [Strongylocentrotus purpuratus] |
| NCBI nr blastp | gi|339263054 | 5e-11 | 45.33% | putative integrase core domain protein [Trichinella spiralis] |
| NCBI nr blastx | gi|339263054 | 1e-10 | 45.33% | putative integrase core domain protein [Trichinella spiralis] |
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS215161-TA
ATGGCAGAAACACCCTTAGAATTTCCTGTTGACGTAGATCTTATAGCTACAGCCACCAAGAAAGACCGTGTATTGTCTCGTGTTCGTCATTATATACTTGTCGGTTGGCCTTCTAAAGTTGATGATAAACACTTACACTCGTATTGGTTACATCGTTCAGAACTATCATTGCACGAGGATTGTGTTTTACTTGGCTGTCGTGTAGTAATTCCGCCAGAACTCCGAATACCATCGTCTTCAAATACGTCGCGCGCCCTTCACGTCTTATCGACCTCCAGATTCTCCGCCAAATATGGAAAGATTCCGTTTGCCAAGGAAATACGAGAGAGACTACGCGTTCTTACATCCATTCGATAG
>DPOGS215161-PA
MAETPLEFPVDVDLIATATKKDRVLSRVRHYILVGWPSKVDDKHLHSYWLHRSELSLHEDCVLLGCRVVIPPELRIPSSSNTSRALHVLSTSRFSAKYGKIPFAKEIRERLRVLTSIR-