DPOGS215304 | ||
---|---|---|
Transcript | DPOGS215304-TA | 714 bp |
Protein | DPOGS215304-PA | 237 aa |
Genomic position | DPSCF300120 - 307292-326956 | |
RNAseq coverage | 51x (Rank: top 70%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL010011 | 4e-56 | 58.41% |   |
Bombyx | % |   | ||
Drosophila | Lsm11-PA | 4e-18 | 31.47% |   |
EBI UniRef50 | UniRef50_E3WXE8 | 8e-25 | 34.03% | Putative uncharacterized protein n=1 Tax=Anopheles darlingi RepID=E3WXE8_ANODA |
NCBI RefSeq | XP_001606444.1 | 6e-31 | 35.68% | PREDICTED: similar to ENSANGP00000018479 [Nasonia vitripennis] |
NCBI nr blastp | gi|156544183 | 1e-29 | 35.68% | PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like [Nasonia vitripennis] |
NCBI nr blastx | gi|156544183 | 3e-30 | 35.68% | PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like [Nasonia vitripennis] |
Group | ||||
---|---|---|---|---|
KEGG pathway |   | |||
InterPro domain | [146-232] IPR001163 | 3.2e-15 | Like-Sm ribonucleoprotein (LSM) domain | |
[118-235] IPR010920 | 5.9e-14 | Like-Sm ribonucleoprotein (LSM)-related domain | ||
[122-233] IPR006649 | 5.5e-09 | Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | ||
Orthology group | MCL17302 |   | Insect specific |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS215304-TA
ATGTCTGAAGGATCTTCATCTGAGTCGGAAACTAGTGCTTGTAGTTCCAAATACGATCCCCTCAAGGCACTTTATTCAGAAAAACCCAAGTTGCCAGATAAAAAGGCGCCGATGTACGAGAATTTAGTTCAATACGAGGCCGCTTTGAAATATAATGATTCGCAAAGTTCTGCTATTATACCAGTAGGTCAAACTAAGCTCGTACAGCAGCGAGAAGAAGAGAAGGAACGAAAGAAGCAGGAACAGCAACGATTACTTGAAGAAAAGAATAAACAGCGCTTTGCACAATATGAAGTACCGGTTCGGAAGGAGAGGCGAGTGAAAAACGTACTCACTCGTATAGAGGGTATCCAGGGACCCCTCGCCGCTCTCAGGGATTGCGTCGACTTGGAGTTAAGGATTAAGGTAATAACGAGACACGCGACCGGCGTCCGGGGAGAACTCTACGGGACCCTGGTGGCCTTCGACAAGCAGTGGAACCTCGCGCTACGTGACGTGGTCGAGGTGTGGCGGAGGAAGGCTCCAGGGAAGAGGAAAATACCACCCGGGTTAGGTACCCCAGTACAGAAAGGTACTGCGGCCGCTATATCGCCTGTGCCAGTGGTGACGGAGACTCCCTTGGGTGGCGGCAGGTGGGAGTGCACCAGACACCTCCCCCAGATGATGGTACGTGGGGAACATGTGGTGTTGGTGAACGTGGTGGAGAGGCGGTGA
>DPOGS215304-PA
MSEGSSSESETSACSSKYDPLKALYSEKPKLPDKKAPMYENLVQYEAALKYNDSQSSAIIPVGQTKLVQQREEEKERKKQEQQRLLEEKNKQRFAQYEVPVRKERRVKNVLTRIEGIQGPLAALRDCVDLELRIKVITRHATGVRGELYGTLVAFDKQWNLALRDVVEVWRRKAPGKRKIPPGLGTPVQKGTAAAISPVPVVTETPLGGGRWECTRHLPQMMVRGEHVVLVNVVERR-