DPOGS216029 | ||
---|---|---|
Transcript | DPOGS216029-TA | 327 bp |
Protein | DPOGS216029-PA | 108 aa |
Genomic position | DPSCF300067 - 621200-622295 | |
RNAseq coverage | 4966x (Rank: top 3%) |
Annotation | ||||
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Heliconius | HMEL008949 | 5e-58 | 96.30% |   |
Bombyx | BGIBMGA009012-TA | 1e-57 | 95.37% |   |
Drosophila | Cyt-c-p-PA | 5e-52 | 85.19% |   |
EBI UniRef50 | UniRef50_G7Y2H8 | 8e-46 | 76.64% | Cytochrome c n=4 Tax=Opisthokonta RepID=G7Y2H8_CLOSI |
NCBI RefSeq | XP_310154.1 | 5e-51 | 86.11% | AGAP009537-PA [Anopheles gambiae str. PEST] |
NCBI nr blastp | gi|124076981 | 1e-54 | 95.37% | RecName: Full=Cytochrome c |
NCBI nr blastx | gi|124076981 | 1e-55 | 95.37% | RecName: Full=Cytochrome c |
Group | ||||
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Gene Ontology | GO:0009055 | 2.2e-81 | electron carrier activity | |
GO:0020037 | 2.2e-81 | heme binding | ||
GO:0005506 | 2.2e-81 | iron ion binding | ||
KEGG pathway | aga:AgaP_AGAP009537 | 2e-50 |   | |
  | K08738 (CYC) | maps-> | Colorectal cancer | |
  |   |   | Amyotrophic lateral sclerosis (ALS) | |
  |   |   | Viral myocarditis | |
  |   |   | Alzheimer's disease | |
  |   |   | Apoptosis | |
  |   |   | Small cell lung cancer | |
  |   |   | Huntington's disease | |
  |   |   | Pathways in cancer | |
  |   |   | p53 signaling pathway | |
  |   |   | Parkinson's disease | |
InterPro domain | [1-107] IPR002327 | 2.2e-81 | Cytochrome c, class IA/ IB | |
[5-107] IPR009056 | 1.2e-45 | Cytochrome c domain | ||
[8-105] IPR003088 | 1.1e-11 | Cytochrome c, class I | ||
Orthology group | MCL11053 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS216029-TA
ATGGGTGTCCCTGCTGGAAATGCGGAAAACGGCAAAAAGATCTTTGTTCAAAGATGTGCTCAATGTCACACCGTTGAGGCTGGCGGCAAGCACAAAGTAGGACCCAACCTACATGGTTTCTTTGGTCGCAAAACTGGTCAAGCTTCCGGGTTTAACTATTCAGAAGCCAACAAAGCTAAAGGTATCACCTGGGGCGATGACACACTCTTTGAGTACTTGGAGAACCCTAAGAAATACATCCCCGGAACAAAGATGGTGTTTGCTGGCCTCAAGAAAGCAAATGAACGTGCGGATCTAATTGCCTACCTTAAAGAAGCTACTAAGTAA
>DPOGS216029-PA
MGVPAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQASGFNYSEANKAKGITWGDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKEATK-