| DPOGS216119 | ||
|---|---|---|
| Transcript | DPOGS216119-TA | 666 bp |
| Protein | DPOGS216119-PA | 221 aa |
| Genomic position | DPSCF300182 + 191261-193786 | |
| RNAseq coverage | 137x (Rank: top 55%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL009308 | 8e-94 | 76.92% | |
| Bombyx | BGIBMGA014560-TA | 2e-101 | 83.82% | |
| Drosophila | Rab30-PB | 3e-36 | 44.71% | |
| EBI UniRef50 | UniRef50_Q9H082 | 9e-61 | 63.48% | Ras-related protein Rab-33B n=64 Tax=Coelomata RepID=RB33B_HUMAN |
| NCBI RefSeq | XP_002413730.1 | 1e-63 | 58.14% | RAB-33, putative [Ixodes scapularis] |
| NCBI nr blastp | gi|260812171 | 7e-63 | 57.48% | hypothetical protein BRAFLDRAFT_95080 [Branchiostoma floridae] |
| NCBI nr blastx | gi|241725236 | 2e-60 | 57.01% | RAB-33, putative [Ixodes scapularis] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0007264 | 7.5e-78 | small GTPase mediated signal transduction | |
| GO:0005525 | 7.5e-78 | GTP binding | ||
| GO:0015031 | 7.5e-78 | protein transport | ||
| GO:0016020 | 9.1e-18 | membrane | ||
| GO:0007165 | 9.1e-18 | signal transduction | ||
| GO:0006184 | 9.1e-18 | GTP catabolic process | ||
| GO:0003924 | 9.1e-18 | GTPase activity | ||
| GO:0005622 | 2.4e-11 | intracellular | ||
| GO:0006886 | 5e-05 | intracellular protein transport | ||
| GO:0006913 | 5e-05 | nucleocytoplasmic transport | ||
| KEGG pathway | ||||
| InterPro domain | [18-186] IPR003579 | 7.5e-78 | Small GTPase superfamily, Rab type | |
| [19-183] IPR001806 | 3.3e-49 | Small GTPase superfamily | ||
| [16-175] IPR005225 | 8.7e-30 | Small GTP-binding protein domain | ||
| [15-186] IPR020849 | 9.1e-18 | Small GTPase superfamily, Ras type | ||
| [20-181] IPR003578 | 2.4e-11 | Small GTPase superfamily, Rho type | ||
| Orthology group | MCL19627 | Patchy | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS216119-TA
ATGTCAGATTCAACAAACGAAATTGTTCCTGGGTTAGGACAGAAGAAAGTTTTTAAAATAATTGTGCTGGGTGATTCTGGGGTAGGAAAAACATGTCTCACGTACCGTTTTTGTGAAGGACAGTTTTTAGATAAATCAGAGGCTACAATAGGGGTGGACTTCCGAGAAAGAACAATACGCATTCGTAACGAAGATATTAAGTTACAGCTATGGGACACAGCTGGTCAAGAGAGGTTCCGTAAATCCATGGTGCAGCATTACTACCGTAATGTACATGCGGTGGTGATAGTTTATGATGTCACCAAACCGGAAACATTCCATTCCATTACAAGCTGGATGTCGGAAGTGGAGTCCCACGGTTTGACAAAAGCTCCTCGTGTGCTGGTCGGTAACAAATGTGACTGTGGATCACCTTCTGATAGACTGGCCACAGTGTATGCACAACGTCTAGCTGATAGATATGGGATGCCGCTCTTCGAAACCTCAGCCTTACTGGACTCGGAGTGTGACAATGTCGAGTCCATCTTCATAACCCTGGCACACAAGCTATACTCTCATCAGCCTTTCAGGGTTGTGAGTGTTGAGGGAGAACTAGGTCCAAGACTGGTAACACTTAATCGACACAAGAGGAATACAACAAGTAATGATAATTGCCTCTGCAGTTAG
>DPOGS216119-PA
MSDSTNEIVPGLGQKKVFKIIVLGDSGVGKTCLTYRFCEGQFLDKSEATIGVDFRERTIRIRNEDIKLQLWDTAGQERFRKSMVQHYYRNVHAVVIVYDVTKPETFHSITSWMSEVESHGLTKAPRVLVGNKCDCGSPSDRLATVYAQRLADRYGMPLFETSALLDSECDNVESIFITLAHKLYSHQPFRVVSVEGELGPRLVTLNRHKRNTTSNDNCLCS-