| New model in OGS2.0 | DPOGS201617 |
|---|---|
| Genomic Position | scaffold2528:- 20838-26965 |
| See gene structure | |
| CDS Length | 1791 |
| Paired RNAseq reads | 1932 |
| Single RNAseq reads | 6196 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012171 (0.0) |
| Best Drosophila hit | karst, isoform C (2e-162) |
| Best Human hit | spectrin beta chain, brain 1 isoform 2 (7e-95) |
| Best NR hit (blastp) | PREDICTED: similar to beta chain spectrin [Nasonia vitripennis] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to beta chain spectrin [Nasonia vitripennis] (7e-167) |
| GeneOntology terms | GO:0030707 ovarian follicle cell development GO:0007009 plasma membrane organization GO:0003779 actin binding GO:0008017 microtubule binding GO:0008092 cytoskeletal protein binding GO:0008091 spectrin GO:0016327 apicolateral plasma membrane GO:0045186 zonula adherens assembly GO:0000910 cytokinesis GO:0006897 endocytosis GO:0016324 apical plasma membrane |
| InterPro families | IPR001715 Calponin homology domain IPR001589 Actinin-type, actin-binding, conserved site IPR002017 Spectrin repeat |
| Orthology group | MCL10080 |
Nucleotide sequence:
ATGGAGGTGGAGGACCTGTTCGTGGATCTCGCAGACGGCCGTCGCCTGCTGAAGCTGCTG
GAGATCATCAGCGGCGAGAGACTGCCTCGCCCCAACTCCGGCCGGATGAGGGTCCACAAG
ATAGAGAACGTCAACAAATCCCTCAGTTTCCTCCACACCAAGGTCCGCTTGGAGTCCATC
GGTGCTGAGGACATCGTGGACTGCAACCCTCGTCTCATCCTGGGCCTCATCTGGACCATC
ATCCTCCGCTTCCAGATCCAGGAGATAGAAATCGATGTGGATGAAGAGAATGTGTCGTCA
GAGAAGAAATCAGCCAAGGACGCCCTCCTGCTGTGGTGTCAGCGGAAGACCAGCGGCTAC
CACGGCGTCCACATACACAACTTCACAGACTCCTGGAGATCAGGACTTGGATTCAACGCT
CTCATACACGCTCACAGACCAGATCTTTTCCGCTGGTCCGAGCTGCCGACCTCCGACCAC
GTGGAGACTCTCAACCATGCTTTCGACGTAGCCCACACACACCTTGGGATACCGAAGCTA
TTGGATGCTGAAGACGTCGACACCACCCGACCCGACGAGCGATCCGTGATGACGTACGTG
GCCAGCTACTACCACACCTTCGCCAGGATGAAGAACGAGCAGAAGAGCGGCCGCAGGATC
GCCAACATCATCGGCCAGCTGATGGACTGTGACGGTCGCAAGGCGGAGTACAGTCGCCTG
GTGTGTGCTCTGCTCGAGTGGATCCGTCTGAAGATACAGGAGCTGAACTGCCGCGAGCTT
CCCAACTCGCTGGACGGCATCCAACGTCTGTTGCTGGCCTTCAAACAGTACAGGACCGTG
GAGAAGCCGCCCAAGTATAAGGAACGTTCTGAAATCGAGGCGTTGTACTTCGATATCAAC
ACGATGCAGAAGAGTTTAGTGGGGGAGCCCTGGGCCCCGCTCGAGGGACAGCTGCCTCAA
GACCTGCAGCGAGCCTGGCAACAGCTGGAACAGGCGGAGCACTCCCGGGAGCTGGCGCTT
CGCACTGAACTGTTAAGACAGGAGAGGCTCGAGCAACTGGCATACAAGTTCCATACTAAG
TCTGTTCTCCGTAAGGGGTACCTCAAGGAGATGATCCAGGTCTTATCTGACCCTCGCTAC
GGGTCCAACGTGGCGCAGGTGGACGCCACCGTCAAGAAACATGAAGCTATATCAGCTGAT
ATCCTCGCCAGCTCGGCCATGGGCTGGCTCGACCGGGGAAGTACCGCCCTGTCACAGATC
GGCATGTCCGATGAGTGGGAGAGGCGGTTGCTCCGTCTCTTTCCCACCCTTCCCTCTCCC
TCTCCCACAATCAAGGCTGTCAACGCATCCGCGACATCTCTTACATTGACGGAGCGGTTC
GAGGATCTATCGGCTATGGCGGCGGAGCTGGTGAAGGAGAAGTACCACGGGGCGGAGAGC
GTCTCCCACACAGAACAGGCAGTGCTGGCCAGGTGGAGGGAACTTCTGGCGCTGCTGGAG
AGACACAGGGCAGCGCTGGCTACTCTGGCCCAGCTGGTGGCGCTGCTCAGGGAAGCTGAG
GCTGTGGGGCACACGCTGCTAGAGATGAAGGCTCAATTCCAATCCGAGGAGGTCGGTAGA
CACCTGGTGGATGTGGAGCGTCTGCTGCAGGCGCACGCCCTCCAGGAACTGCAGCTGGGG
GCTCTGGATGACACCATCAAGAGACTGGCGAGAGCGGGGGCGGGAGACCACGCCTCCGCC
GCCCAGCTCCGGGGCGCCCTGGACTCACTGACTGATGATTATACCGGGTGA
Protein sequence:
MEVEDLFVDLADGRRLLKLLEIISGERLPRPNSGRMRVHKIENVNKSLSFLHTKVRLESI
GAEDIVDCNPRLILGLIWTIILRFQIQEIEIDVDEENVSSEKKSAKDALLLWCQRKTSGY
HGVHIHNFTDSWRSGLGFNALIHAHRPDLFRWSELPTSDHVETLNHAFDVAHTHLGIPKL
LDAEDVDTTRPDERSVMTYVASYYHTFARMKNEQKSGRRIANIIGQLMDCDGRKAEYSRL
VCALLEWIRLKIQELNCRELPNSLDGIQRLLLAFKQYRTVEKPPKYKERSEIEALYFDIN
TMQKSLVGEPWAPLEGQLPQDLQRAWQQLEQAEHSRELALRTELLRQERLEQLAYKFHTK
SVLRKGYLKEMIQVLSDPRYGSNVAQVDATVKKHEAISADILASSAMGWLDRGSTALSQI
GMSDEWERRLLRLFPTLPSPSPTIKAVNASATSLTLTERFEDLSAMAAELVKEKYHGAES
VSHTEQAVLARWRELLALLERHRAALATLAQLVALLREAEAVGHTLLEMKAQFQSEEVGR
HLVDVERLLQAHALQELQLGALDDTIKRLARAGAGDHASAAQLRGALDSLTDDYTG