New model in OGS2.0 | DPOGS202470  |
---|---|
Genomic Position | scaffold1141:+ 31511-33680 |
See gene structure | |
CDS Length | 978 |
Paired RNAseq reads   | 370 |
Single RNAseq reads   | 853 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | ND |
Best Drosophila hit   | CG6745 (6e-35) |
Best Human hit | pseudouridylate synthase 7 homolog (6e-28) |
Best NR hit (blastp)   | tRNA pseudouridine synthase D [Culex quinquefasciatus] (1e-63) |
Best NR hit (blastx)   | tRNA pseudouridine synthase D [Culex quinquefasciatus] (1e-57) |
GeneOntology terms    | GO:0001522 pseudouridine synthesis GO:0009982 pseudouridine synthase activity GO:0003723 RNA binding |
InterPro families    | IPR001656 Pseudouridine synthase, TruD IPR020103 Pseudouridine synthase, catalytic domain |
Orthology group | MCL12703 |
Nucleotide sequence:
ATGCGAGGTGGGCATAGAGGTGGTCGCGGTCAAAACCGTGGGAATAGAGGATTCAGAGGT
TCGAGAGGTAATTATTCGCGTGGTGACAGACAAAATAATTTGGGATATAATAATTACAAT
AAGCCATGGCATTCGCAAACCAAACGTGATATTCCAACTAAACGACTCTCTGAAGAGGAT
ATTGGAGTCACCGAGTACCTCAGTGAGCATCAAGGATTTAACGGAATCATAAAGTCGAGA
TTTTCAGATTTTCAAGTGTCAGAAATAAATGAGGCGGGTGAAGTTGCTCAGCTGACAGAT
GAGTCTCCACCCGAAGCACCATTAGAGGAGCTGGTTGAAGACGACGAAGAACTGCTTCTC
AATAAATACAATTTGGAAATTCTACCTATGGAAACTTGGGACAAAATAAACAAGTTGGCT
GTCTCTACTGAACAAACTTCAGAAAAAATTGAGGTTGATGTATCAGGAATGTCCAAAGAG
GACAGGACAAAAATCCACGAGGCTGTCAAAAAAGCGTTCGGTGAAAGCATCATTGGTAGC
ACAGTCACGGTAGAAGACAAGAAGTTTGTTACATTCACCAAGTATCGCAAGGGAGTCAGA
TTTGATAATCGTGTGAAGTGGGTGTGGGGTGGTGAGTATGTACATTTTGTGGTGTACAAG
GAGAACTGCGATACCATGGAAGCTGCATCAGTACTGGCGCAAAGGTTACATATAAGCCCT
TCAATGCTGGGTTATGCTGGAACTAAAGATAGGAGAGCTAAGACCAGCCAGTGGTTCAGC
ATCCGTAGGTTCGAACCTCGTCGTATAGCGTCAGCGGCCCAGCAGAATCGGATGCCTAGA
GTGCGGGTTGGCAATTTCTGCTTCAAGGATTACCATCTCAAGCTGGGCATGCTGAAAGGA
AACAAGTATGTTGATATAGCTATATTAGTATCTCAGCTAACATTACAAATGATTTTATAC
GATTGTAGATGGCGCTGA
Protein sequence:
MRGGHRGGRGQNRGNRGFRGSRGNYSRGDRQNNLGYNNYNKPWHSQTKRDIPTKRLSEED
IGVTEYLSEHQGFNGIIKSRFSDFQVSEINEAGEVAQLTDESPPEAPLEELVEDDEELLL
NKYNLEILPMETWDKINKLAVSTEQTSEKIEVDVSGMSKEDRTKIHEAVKKAFGESIIGS
TVTVEDKKFVTFTKYRKGVRFDNRVKWVWGGEYVHFVVYKENCDTMEAASVLAQRLHISP
SMLGYAGTKDRRAKTSQWFSIRRFEPRRIASAAQQNRMPRVRVGNFCFKDYHLKLGMLKG
NKYVDIAILVSQLTLQMILYDCRWR