| New model in OGS2.0 | DPOGS202470 |
|---|---|
| Genomic Position | scaffold9634:- 1400-4119 |
| See gene structure | |
| CDS Length | 1095 |
| Paired RNAseq reads | 455 |
| Single RNAseq reads | 1134 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010884 (2e-35) |
| Best Drosophila hit | CG6745 (4e-36) |
| Best Human hit | pseudouridylate synthase 7 homolog (3e-23) |
| Best NR hit (blastp) | PREDICTED: similar to tRNA pseudouridine synthase D [Nasonia vitripennis] (3e-52) |
| Best NR hit (blastx) | PREDICTED: similar to tRNA pseudouridine synthase D [Nasonia vitripennis] (1e-46) |
| GeneOntology terms | GO:0001522 pseudouridine synthesis GO:0009982 pseudouridine synthase activity GO:0003723 RNA binding |
| InterPro families | IPR011760 Pseudouridine synthase, TruD, insertion domain IPR001656 Pseudouridine synthase, TruD IPR020103 Pseudouridine synthase, catalytic domain |
| Orthology group | MCL12703 |
Nucleotide sequence:
AGGTTCGGTTCGCGCGCTGATGTGCCGACGCACGAGATCGGTCTGAAACTGCTGCAGGGG
AATTTTAAAAAGGCTATAGACAGTATACTGACCCAGCGGCCTGATGGACCCCTGAGTGCG
GCGTTACAGCAGTACTCGTCGGGGGACGTGCGGGCGGCGGGGAGGGCGGTGCCGCCGCGT
GACGTCACACCGGAAGCCCGACTCCTGAGGGCGCTCGCAGCTCGACCCAACGACCTGCTG
GGGGCGCTGCAACAGGTGTCCCGTAACTGTCGTCTCCTCTACATACATTCGTACCAGTCA
TTGATATGGAACCGAGCGGCCACACATCGTCTGACACAATCTAGGACACCTTTAGTGGGA
GATCTAGTGCCTTTAGAGCCGGTGGCTCAGGTTACTGAAGACGAACTAGATGAAGAATCT
GATAATGAGGACAGCGAAAATGTTACACAAGATCAGAACACAGATAACATTGAGAAAACA
GAGGAAGCGACTTGTAATGGCACAGAAAATAACACTGATAGCAATGAGAACACAGATAAA
AAAAAGAAGGGCAACACTCCCAAAAAAGTGATACCAGTTAAAGTGTTAACAAAGGAAGAC
ATTGATAGCGGGAAATATAGTATCTTTGATATAGTGTTGCCATTACCCGGCTACAGTATA
GAGTACCCTCCTAACATGAGGGAGTTCTATGAAGAGTGTTTAACTAAGGACGAACTGACA
ATGGATATGAAGCATAAGTATAAATCGTACAACCTGAGCGGTGGTTACCGTCACGTGGTG
TGTCGCGTGTCGGACATGTCCTGGAGGTGTGTGAGGTACGACCGGCCCACCGACGACCTC
GTGCTCTCAGACGCCGACCTCATTGACGGGGTCAACATCACTCACAATGAGGATGGTAAA
TACAAGGCTTTGTTGCTCACAATGACCTTGCCCACGAGCTGTTACGCGACTATGGCGCTG
CGGGAATTGTTGCGTGTGGGCACTTCGAGTGACGTGCAAGCCTTACAGAACGACTACCAC
GTCGACAAAGACGCTGTCAAAAGAAAGATGGCCGACGACGAAACAGACGCCAAGAAAACT
AAAGTTGACGAATAA
Protein sequence:
RFGSRADVPTHEIGLKLLQGNFKKAIDSILTQRPDGPLSAALQQYSSGDVRAAGRAVPPR
DVTPEARLLRALAARPNDLLGALQQVSRNCRLLYIHSYQSLIWNRAATHRLTQSRTPLVG
DLVPLEPVAQVTEDELDEESDNEDSENVTQDQNTDNIEKTEEATCNGTENNTDSNENTDK
KKKGNTPKKVIPVKVLTKEDIDSGKYSIFDIVLPLPGYSIEYPPNMREFYEECLTKDELT
MDMKHKYKSYNLSGGYRHVVCRVSDMSWRCVRYDRPTDDLVLSDADLIDGVNITHNEDGK
YKALLLTMTLPTSCYATMALRELLRVGTSSDVQALQNDYHVDKDAVKRKMADDETDAKKT
KVDE