| New model in OGS2.0 | DPOGS211526 DPOGS211496 |
|---|---|
| Genomic Position | scaffold1813:+ 26004-26381 |
| See gene structure | |
| CDS Length | 378 |
| Paired RNAseq reads | 119 |
| Single RNAseq reads | 463 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003840 (1e-38) |
| Best Drosophila hit | small nuclear ribonucleoprotein at 69D (1e-29) |
| Best Human hit | small nuclear ribonucleoprotein Sm D1 (5e-30) |
| Best NR hit (blastp) | small nuclear ribonucleoprotein Sm D1 [Bombyx mori] (8e-46) |
| Best NR hit (blastx) | small nuclear ribonucleoprotein Sm D1 [Bombyx mori] (7e-37) |
| GeneOntology terms | GO:0000387 spliceosomal snRNP assembly GO:0003676 nucleic acid binding GO:0005515 protein binding GO:0005634 nucleus GO:0005654 nucleoplasm GO:0005737 cytoplasm GO:0005829 cytosol GO:0008380 RNA splicing GO:0030529 ribonucleoprotein complex |
| InterPro families | IPR006649 Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type IPR010920 Like-Sm ribonucleoprotein (LSM)-related domain IPR001163 Like-Sm ribonucleoprotein (LSM) domain |
| Orthology group | MCL12253 |
Nucleotide sequence:
ATGAAGCTAGTGAGGTTTTTGATGAAATTGAGTCATGAAACTGTGACTATTGAGCTTAAG
AACGGCAGTGTTGTCCACGGTACAATCACCGGCGTCGATGTAGCTATGAACACACATTTA
AAGGCTGTTAAAGTTACATTGAAAAACAAAGAGGAACTACAGTTAGAAACACTTAGTATA
CGTGGAAACAATATTAGATATTTCCTGCTTCCAGACAGTTTACCTTTAGAGACATTATTA
ATAGACGATGCTCCTAAAGGTAAGGGCAAACGGGAAGGTTTCGCCAGAGGTGGCACTAGA
GGAGGAAGGGGCCGAGGCAGAGGCGGCCGTGGAGGTCCTAGAGGTGGGAGAGGCGGCAGA
GGTCGTGGCCGTCGATAA
Protein sequence:
MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNKEELQLETLSI
RGNNIRYFLLPDSLPLETLLIDDAPKGKGKREGFARGGTRGGRGRGRGGRGGPRGGRGGR
GRGRR