| New model in OGS2.0 | DPOGS208620 |
|---|---|
| Genomic Position | scaffold862:- 27207-30297 |
| See gene structure | |
| CDS Length | 708 |
| Paired RNAseq reads | 38 |
| Single RNAseq reads | 154 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005723 (2e-104) |
| Best Drosophila hit | Histamine-gated chloride channel subunit 1, isoform B (6e-87) |
| Best Human hit | glycine receptor subunit alpha-3 isoform a (5e-30) |
| Best NR hit (blastp) | PREDICTED: similar to Histamine-gated chloride channel subunit 1 CG14723-PA, isoform A [Apis mellifera] (1e-107) |
| Best NR hit (blastx) | PREDICTED: similar to histamine-gated chloride channel, partial [Acyrthosiphon pisum] (6e-90) |
| GeneOntology terms | GO:0016933 extracellular-glycine-gated ion channel activity GO:0019182 histamine-gated chloride channel activity GO:0019183 histamine-gated chloride channel complex GO:0006811 ion transport GO:0045211 postsynaptic membrane GO:0016021 integral to membrane GO:0043052 thermotaxis |
| InterPro families | IPR006029 Neurotransmitter-gated ion-channel transmembrane domain IPR006202 Neurotransmitter-gated ion-channel ligand-binding IPR006028 Gamma-aminobutyric acid A receptor IPR006201 Neurotransmitter-gated ion-channel |
| Orthology group | MCL16541 |
Nucleotide sequence:
ATGCTGTTAGTTTTCTTATCACATACAGTGCACGACTTAGTATTCATCTGGAACCTAACA
GATCCTTTGGTTGTAAATCCAGACATCGAGCTCCCTCAACTAGATATAGCTAACAACTTT
ACCTCCGACTGCACTATCGAGTACTCCACAGGTAACTTCACATGCCTAGCGGTAGTTTTC
AACTTACGCCGACGTCTTGGCTACCACCTGTTCCACACATACATACCATCCGCGCTCATT
GTAGTGATGTCCTGGATATCTTTCTGGATTAAGCCGGAAGCTATCCCTGCGAGGGTTACC
CTCGGAGTAACCTCTCTTTTGACCTTGGCAACCCAAAATACTCAGTCCCAACAAAGTTTA
CCACCAGTCTCCTATGTCAAAGCTATAGATGTCTGGATGTCTTCATGTTCCGTCTTCGTT
TTCCTGTCCCTATTCGAGTTCGCTGTGGTCAATAACTACATGGGCCCTGTAGCTACAAAG
GCCATGAAAGGATACTCTGATGAAGATTTGAGTAGAGATTTAGATGCTTACAAGCACATA
TTTCCAAACTCGGTGGACCCTCGAGCGAGTACGTCTGCCTCGCTCCCACAATACGAAACC
TTCTGTAACGGGAGAGAGACAGCATTATACATAGACCGTTTCTCCCGTTTCTTCTTCCCA
TTCTCATTCTTCATACTAAACGTCGTATATTGGTCCACGTTTCTATAA
Protein sequence:
MLLVFLSHTVHDLVFIWNLTDPLVVNPDIELPQLDIANNFTSDCTIEYSTGNFTCLAVVF
NLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSL
PPVSYVKAIDVWMSSCSVFVFLSLFEFAVVNNYMGPVATKAMKGYSDEDLSRDLDAYKHI
FPNSVDPRASTSASLPQYETFCNGRETALYIDRFSRFFFPFSFFILNVVYWSTFL