| New model in OGS2.0 | DPOGS206841 |
|---|---|
| Genomic Position | scaffold1:- 2782424-2784718 |
| See gene structure | |
| CDS Length | 2295 |
| Paired RNAseq reads | 123 |
| Single RNAseq reads | 363 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013073 (0.0) |
| Best Drosophila hit | okra (0.0) |
| Best Human hit | DNA repair and recombination protein RAD54-like (0.0) |
| Best NR hit (blastp) | steroid receptor-interacting snf2 domain protein [Aedes aegypti] (0.0) |
| Best NR hit (blastx) | steroid receptor-interacting snf2 domain protein [Aedes aegypti] (0.0) |
| GeneOntology terms | GO:0000711 meiotic DNA repair synthesis GO:0000724 double-strand break repair via homologous recombination GO:0003674 molecular_function GO:0005634 nucleus GO:0006338 chromatin remodeling GO:0010212 response to ionizing radiation GO:0043150 DNA synthesis involved in double-strand break repair via homologous recombination |
| InterPro families | IPR000330 SNF2-related IPR001650 Helicase, C-terminal IPR013967 Rad54, N-terminal IPR014001 DEAD-like helicase |
| Orthology group | MCL10215 |
Nucleotide sequence:
ATGCGACGAAGTTTGGCTCCTAGCCAAATAGGTTCCGGAGACACTGTCTTCAAGAGCCCA
TTAATAAATTCGAGTAACAGAAAAAAGAGGGAATGTAATGCAAGAATACCACTTGCGCAG
AAATCTCTGTCTCAACTCTCCACATCTGAGCACGAGAATCTCATTAAACAAATTTTAAGT
AAACCATTTAAAGTTCCTCTTCCAAACTATGTCTCGTCGTATTGTAGCAAAAGTCTAGGA
TTAAAAAGAACTCAAGTGCGCCGGCCTTTGCATGATCCCGATGAGCCCAATGCGCTTGTT
TTATATCGCCCTCCATACATGCCGGAACATGAAAAAATGAAGATGAATGCAAACGAGATA
AAAGTAGCAGTTGTTGTTGATCCAGTGCTTGGTAACATACTGAGACCCCATCAAAGGGAA
GGAGTAAAGTTTATGTATGACTGTGTAACTGGAGCTCAGATTGATAATGCATATGGATGT
ATCATGGCAGATGAAATGGGGTTAGGAAAGACATTGCAATGTATAACATTGTTATGGACT
CTGTTACGGCAAGGACCAGATTGCAAGCCAACTATATGCAAAGCTATAATTGTTTGCCCC
AGTAGCTTAGTGAAGAATTGGTACAATGAAATAGGGAAGTGGCTTGGGCAAAGGATTAAT
GCATTGCCTATGGATGGTGGTTCAAAAGCTGAAATTACTTTGAAGCTTCAACAATTTATG
AACACTTTTGCAGCTATAAGAGTTGCTACACCAGTTCTCATCATATCATATGAAACATTT
AGGATATATTCTAATATCTTACATGCATCAGAAGTTGGTTTAGTGTTATGTGATGAGGGT
CATAGACTGAAGAACAGTGAGAATCAGACATACCAAGCTTTGATGGGCTTAAAGGCTAAG
AGAAGGATCCTCATTTCAGGAACCCCTATCCAGAATGATTTGACAGAGTATTTCAGCTTG
GTACACTTTGTGAATAGTGGCATTCTTGGTACTGCTCAAGATTTTAAGAAGAGGTATGAG
AATCCAATATTAAAAGGACAAGATGCGTTAGCTACACCACAAGAAAGGCAAAAGGCTCAG
GAATGTCTTCAAACACTGACATCAATAGTCAATAAATGTATGATACGAAGAACTAGTAGT
CTGCTTACAAAATACTTGCCGGTTAAGTTTGAACAAGTCATCTGTGTGAAAATGACACCT
CTTCAAACACAGTTATATAGAAACTTCATTAATTCTGATGCCATTAAAAATAAGTTTGCT
GGAACAGGGGACAAGAATACTTTGAGTGCCCTTTCAAGTATTACCATGCTGAAGAAATTG
TGTAATCACCCAGATTTAGTCTACGATAAAATCATGGAAAGATCTGAAGGTTTTGAAAAA
GGGAAAGACTTGTTACCAAGCAATTACGACATAAAGGACGTAAGGCCAGAGTATTCTGGA
AAACTAATGATATTGGATTGTATTTTGGCTAATTTAAAAACTAATACCGATGACAAAATT
GTTCTTGTATCAAACTACACACAGACTCTTGATCTTTTTGAGAAATTGTGCCGTAAACGC
TGTTATCAATATGTGCGTTTGGATGGCTCTATGACTATAAAGAAAAGAGCTAAAGTTGTC
GAAAGCTTTAACAGTAAGGAGTCGAAGGAGTGGATATTCATGTTAAGTTCTAAAGCTGGT
GGCTGTGGATTGAATCTTATTGGCGCGAATCGACTTATTATGTTTGACCCAGATTGGAAT
CCCGCTAATGACGACCAGGCCATGGCAAGAGTATGGCGAGATGGTCAAAAGAAACCGTGC
TACATCTACCGTTTGTTAGCCACAGGGACAATAGAAGAGAAAATATTTCAACGTCAAGCA
CATAAAAAAGCTCTTAGCGATACTGTCGTGGACCAAAATGAGGACTCCATGCGACATTTT
ACATCTGATGATTTGAAAGACTTGTTCCGGTTAGAAGATAACACACTTTCAGATACTCAC
AGCAAATTTAAGTGTAAGCGATGTGTTAACAATATTCAAGTCACTTTGCCTCCTGAAAAT
TCGGACTGCACATCAGATCTATCTAACTGGTATCACTGTGCAGATAAAAAGAATTTAGCT
GATCTAGTATTAAAACAATGCTGGGATCTCGCTAAAAGTATTTCTTTCGTTTTCCACCAT
CGATCAGCACAAACAGAAGCAGAAATGGGCAAAGAAGAGAATAAGGAAAATGTCCAACAA
TGTAAAAGAAGGAAAATTGATATTGATGAGGATTACTCTGAACCCGATGACAGTGCTGAT
GAAGATTATCATTAA
Protein sequence:
MRRSLAPSQIGSGDTVFKSPLINSSNRKKRECNARIPLAQKSLSQLSTSEHENLIKQILS
KPFKVPLPNYVSSYCSKSLGLKRTQVRRPLHDPDEPNALVLYRPPYMPEHEKMKMNANEI
KVAVVVDPVLGNILRPHQREGVKFMYDCVTGAQIDNAYGCIMADEMGLGKTLQCITLLWT
LLRQGPDCKPTICKAIIVCPSSLVKNWYNEIGKWLGQRINALPMDGGSKAEITLKLQQFM
NTFAAIRVATPVLIISYETFRIYSNILHASEVGLVLCDEGHRLKNSENQTYQALMGLKAK
RRILISGTPIQNDLTEYFSLVHFVNSGILGTAQDFKKRYENPILKGQDALATPQERQKAQ
ECLQTLTSIVNKCMIRRTSSLLTKYLPVKFEQVICVKMTPLQTQLYRNFINSDAIKNKFA
GTGDKNTLSALSSITMLKKLCNHPDLVYDKIMERSEGFEKGKDLLPSNYDIKDVRPEYSG
KLMILDCILANLKTNTDDKIVLVSNYTQTLDLFEKLCRKRCYQYVRLDGSMTIKKRAKVV
ESFNSKESKEWIFMLSSKAGGCGLNLIGANRLIMFDPDWNPANDDQAMARVWRDGQKKPC
YIYRLLATGTIEEKIFQRQAHKKALSDTVVDQNEDSMRHFTSDDLKDLFRLEDNTLSDTH
SKFKCKRCVNNIQVTLPPENSDCTSDLSNWYHCADKKNLADLVLKQCWDLAKSISFVFHH
RSAQTEAEMGKEENKENVQQCKRRKIDIDEDYSEPDDSADEDYH