New model in OGS2.0 | DPOGS209929  |
---|---|
Genomic Position | scaffold1866:+ 11926-17014 |
See gene structure | |
CDS Length | 1923 |
Paired RNAseq reads   | 2384 |
Single RNAseq reads   | 6036 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA010941 (5e-51) |
Best Drosophila hit   | Srp72 (1e-106) |
Best Human hit | signal recognition particle 72 kDa protein (2e-83) |
Best NR hit (blastp)   | signal recognition particle 72 kDa protein [Culex quinquefasciatus] (7e-144) |
Best NR hit (blastx)   | PREDICTED: similar to signal recognition particle [Nasonia vitripennis] (2e-124) |
GeneOntology terms    | GO:0005786 signal recognition particle, endoplasmic reticulum targeting GO:0006614 SRP-dependent cotranslational protein targeting to membrane GO:0008312 7S RNA binding GO:0033227 dsRNA transport |
InterPro families    | IPR013699 Signal recognition particle, SRP72 subunit, RNA-binding IPR019734 Tetratricopeptide repeat IPR011990 Tetratricopeptide-like helical |
Orthology group | MCL13500 |
Nucleotide sequence:
ATGTCAGCCAACAAGGAAAATAACCTTGTTCAGGCTTATATAGAATTAAATAAGTTTTGC
CAAAATGGAGACTACGAAAGAGCATTGAAGGCTGCAGGGAAAGTCCTGCAAATATCTCCG
AACGAACAAAAAGCATTTCACTGTAAAGTTGTGTGCTTCATACATTTGCACAACTTTAAA
GAGGCTTTATCTGTCCTCTGCAACCCCAAGAATGCGGCGTTGGCAGCTGATCTGGTGTTC
GAGAAGGCTTACTCTCAATACCGACTGAACTGTCCAAAAGATGCCTTGGACACTGTGGAT
AGTGCGCCTGAGTTAACACCAGCATTAAAAGAACTTAGAGCTCAAATCTTATACCGACTG
GAACAATACCAGGAGTGCTTCAACCTTTACCGTGATATAGTCAAGAATACTGACGACGAC
TATGAAGATGAGAGGAAGGCCAACTTGTCAGCCGTGGTCGCAAATCTGGCTGCTATCAAT
CCATCGGCAGATCTTCCGACATTCGAAGAAAATACCTACGAACTATCATATAACTCGGGA
ACCACTTTAGTCATGCGCGGCAAGTACAATGAAGCGTTATCAGTGCTGAAGAAGGCCGAA
CAAGGGTGTTCGGAAAGCATTATTGATGACGGAGGTACAGAGGAAGAAGCTAAGGAAGAA
GCTGCTATTATATGGGTCCAGCAAGCATTCTGCCAACAACAAATGGGCAAGGAAAAGGAA
GCGGCGGCCTTATACCATAATGTTCTTAAAGATAAACCCAGCGACCAAGCCCTGGTCGCT
ATCGCCAGCAACAACCTAGTAGTAATCAATCGTGACACCAATGTATTTGATTCTCGCAAA
CGTATGAAGGCTGCAACTCAAGATGGCCTGGAGCACAAGCTTACCTCAAGACAACGTGCC
TCTATTGCCTACAACCAAGCACTACTTGCTATATATTCTAATCAGCCGGACTTCTGCAAG
CAATGCTGTGTGAAACTCAACCGTGAGTTCAGACAAGATCATCGGGCAACGCTCGTCGAA
GCTGCCTCACTTCACAAGGAAGGGAAAAGACAGCAGGCTATCACTCTGCTGTTGAAGAGT
GGGGGCGTACTCGTTCTGGCTGCAGTACAGATCATGTTGGCACAAGGTGATCGGAAAGGT
GTTGTCAAGTTGTTGGAAGATAGTGAATTTAAATACAAACCAGCCGTCATTGGTCTTCTA
TACACCCTGCTGGCCGCGGATAATGAATATGAGAAGGCTTCTCAGATGTTCACCGATGTC
TACGAACATTACAAGAACGATGATGAGGCGATGTCCGCACTGCGCGGTGTGTGGCGGGCG
GCTGCGGAAGTTCACACTCGAGCCGGGGACGCCGCCCGCGCGGCCCTCGCGCACGAGGCG
TTAGCGCGGGCAGCGCCGCAGGACAAGCGTAGTCTCGCACGACTCGTGAAGGCGCTCCGC
GGAGACCCCGCCAGGGCGAAGGCCCTCGCTGAAGCCCTACCACCTATATCAGAGCTTGAG
TGTAAAATAGACGTGGATGCTCTGGAGTCCTCTAAGTGGATGATGGGTGCCAAGGTCGTC
AAGAAAACTGTACAGAGCAAACAGGAACAATCGCCAGGCACTCCTGGTTCCGAGCTGGGG
CAGAAGACTAAACCGAAACGTAAACGTAAGACCAAGCTACCACCTAATGCTGACCTCTCT
AGACCCCCGGATCCGGAAAGATGGCTGCCCAAGTACGAGCGCACGGCGTACCGCAAGCGT
CGCGGCGTGAGGCGTGACGTCATCAAGGGCAGTCAAGGACTTACCACCGCTGCCGTTGAT
CAGTACGACATGAGCAAACAGACTCCTAGTACCGCCACCAAGTCACCTCGTGTGGAAGTG
AAGGCCACGGAGACCTGGACGAGGAAGCAACAGAAGAAGAAGGGCAAGGGGCGGAAATGG
TGA
Protein sequence:
MSANKENNLVQAYIELNKFCQNGDYERALKAAGKVLQISPNEQKAFHCKVVCFIHLHNFK
EALSVLCNPKNAALAADLVFEKAYSQYRLNCPKDALDTVDSAPELTPALKELRAQILYRL
EQYQECFNLYRDIVKNTDDDYEDERKANLSAVVANLAAINPSADLPTFEENTYELSYNSG
TTLVMRGKYNEALSVLKKAEQGCSESIIDDGGTEEEAKEEAAIIWVQQAFCQQQMGKEKE
AAALYHNVLKDKPSDQALVAIASNNLVVINRDTNVFDSRKRMKAATQDGLEHKLTSRQRA
SIAYNQALLAIYSNQPDFCKQCCVKLNREFRQDHRATLVEAASLHKEGKRQQAITLLLKS
GGVLVLAAVQIMLAQGDRKGVVKLLEDSEFKYKPAVIGLLYTLLAADNEYEKASQMFTDV
YEHYKNDDEAMSALRGVWRAAAEVHTRAGDAARAALAHEALARAAPQDKRSLARLVKALR
GDPARAKALAEALPPISELECKIDVDALESSKWMMGAKVVKKTVQSKQEQSPGTPGSELG
QKTKPKRKRKTKLPPNADLSRPPDPERWLPKYERTAYRKRRGVRRDVIKGSQGLTTAAVD
QYDMSKQTPSTATKSPRVEVKATETWTRKQQKKKGKGRKW