DPOGS200342 | ||
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Transcript | DPOGS200342-TA | 699 bp |
Protein | DPOGS200342-PA | 232 aa |
Genomic position | DPSCF300026 + 514514-516208 | |
RNAseq coverage | 2675x (Rank: top 5%) |
Annotation | ||||
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Heliconius | HMEL000047 | 2e-51 | 96.97% |   |
Bombyx | BGIBMGA005635-TA | 4e-49 | 87.04% |   |
Drosophila | SC35-PD | 9e-44 | 89.89% |   |
EBI UniRef50 | UniRef50_E0VC94 | 3e-49 | 86.79% | Serine/arginine rich splicing factor, putative n=1 Tax=Pediculus humanus corporis RepID=E0VC94_PEDHC |
NCBI RefSeq | XP_002423754.1 | 5e-50 | 86.79% | serine/arginine rich splicing factor, putative [Pediculus humanus corporis] |
NCBI nr blastp | gi|242005811 | 9e-49 | 86.79% | serine/arginine rich splicing factor, putative [Pediculus humanus corporis] |
NCBI nr blastx | gi|261335957 | 1e-55 | 96.33% | putative Sr protein [Heliconius melpomene] |
Group | ||||
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Gene Ontology | GO:0003676 | 2.5e-25 | nucleic acid binding | |
GO:0000166 | 2.8e-24 | nucleotide binding | ||
KEGG pathway | ame:409862 | 2e-46 |   | |
  | K12891 (SFRS2) | maps-> | Spliceosome | |
InterPro domain | [15-88] IPR000504 | 2.5e-25 | RNA recognition motif domain | |
[11-94] IPR012677 | 2.8e-24 | Nucleotide-binding, alpha-beta plait | ||
Orthology group | MCL12352 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS200342-TA
ATGAGTTACGGAAGACCACCGCCGCGAATAGACGGCATGGTTTCTCTTAAAGTGGACAATCTAACATATAGGACTACACCAGATGATTTACGTCGCGTTTTCGAAAGGTGTGGTGATGTCGGCGATATTTATATTCCAAGAGACAGATATACACGTGAAAGCAGAGGGTTTGCTTTTGTCAGGTTCTTCGAAAGGCGCGATGCCGAGGAAGCACTAGATTCATTAGACGGAAGAATGTTAGACGGCAGAGAATTGCGAGTTCAAATGGCCAGATATGGTAGACCATCTTCACCATACAGAAGCCGCTACGACCGTCGTCGGAGTAATTTACATATGTGTGTGATGATGTTTCTTTTAGCCACTCGCGTTCACGGTCTCGTTCACGTCGTCGCTCCAGGTCCCGGTCCCGCCGCCGCTCGTACTCTCGCAGCCGGTCCCGCTCGCGCTCCCGATCCCGCAGTCGCTCGGACTCCAAGAGCTCCCGCGGCAAGTCCCGCAGTCGCAGCCGCAGCCGCTCTCGTTCAAGACATTGAATTTTTAATTGCTAAAGTATTGTTTTCTCTTCTGTGCAGGTTTAAAGTATCTTGTAAGCTGAAGTGCTGCACTTCAAACAAATGGCAGCCTAGGCTAAGGGCATGGAGTATGCAGAGCGAGGCGTTTGCGGGGAGGGGGGTTTTGCTGTTTGCTGACAACTGCTGA
>DPOGS200342-PA
MSYGRPPPRIDGMVSLKVDNLTYRTTPDDLRRVFERCGDVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDSLDGRMLDGRELRVQMARYGRPSSPYRSRYDRRRSNLHMCVMMFLLATRVHGLVHVVAPGPGPAAARTLAAGPARAPDPAVARTPRAPAASPAVAAAAALVQDIEFLIAKVLFSLLCRFKVSCKLKCCTSNKWQPRLRAWSMQSEAFAGRGVLLFADNC-