Monarch geneset OGS2.0

DPOGS200944
TranscriptDPOGS200944-TA903 bp
ProteinDPOGS200944-PA300 aa
Genomic positionDPSCF300215 - 111733-113049
RNAseq coverage335x (Rank: top 34%)
Annotation
HeliconiusHMEL0074871e-17096.60% 
BombyxBGIBMGA010209-TA7e-16899.30% 
DrosophilaCG14213-PA2e-12875.00% 
EBI UniRef50UniRef50_Q926003e-13887.41%Cell differentiation protein RCD1 homolog n=57 Tax=Eukaryota RepID=RCD1_HUMAN
NCBI RefSeqNP_001170796.11e-17198.98%cell differentiation protein RCD1 homolog [Bombyx mori]
NCBI nr blastpgi|2935975582e-17098.98%cell differentiation protein RCD1 homolog [Bombyx mori]
NCBI nr blastxgi|2935975587e-16498.98%cell differentiation protein RCD1 homolog [Bombyx mori]
Group
Gene OntologyGO:00054885.6e-08binding
KEGG pathwayame:4123881e-147 
 K12606 (RCD1, CNOT9, CAF40)maps-> RNA degradation
InterPro domain[1-280] IPR0072167.2e-239Cell differentiation, Rcd1-like
[5-249] IPR0160245.6e-08Armadillo-type fold
[59-250] IPR0119891.2e-06Armadillo-like helical
Orthology groupMCL13938 Single-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS200944-TA
ATGAGTGCACAACAAAGCCCGGCTAATATGCAGGCAGCCGTGGATCGCGAAAAGATATACTCATGGATTTTAGAACTATGCAATCCAGAAACACGTGAAAATGCACTTTTGGAACTGAGTAAAAAGCGTGAAGTTGTACCAGATTTGGCGCCAATGCTATGGCACAGCTTCGGAACTATTGCAGCTTTGTTACAGGAGATCACTAACATTTACGTGGCCATGATACCACCGACGCTTACGGCCCACCAGAGCAACCGAGTCTGCAACGCTCTGGCTCTTATGCAATGTGTGGCATCACATCCAGAGACGAGATCTGCATTTCTTCAAGCTCATGTACCTCTGTTCCTGTATCCTTTCCTCCACACTGTGTCAAAGACGCGTCCATTTGAATACCTGCGCCTTACCAGTCTAGGAGTTATTGGTGCTCTAGTCAAAACTGATGAACAGGAAGTCATCACATTTCTATTGACAACAGAAATTATACCATTGTGCCTGCGCATCATGGAAAATGGATCTGAGCTGTCCAAAACAGTAGCAACATTTATATTACAGAAAATTCTCCTGGATGATAGCGGTCTGAGTTATATTTGCCAAACGTATGATAGATTTTCTCATGTCGCTATGATATTAGGAAAAATGGTGTTGTCATTGGCTAAAGATCCATCTGCAAGATTGCTAAAACATGTGGTCCGTTGCTATCTCCGTTTGTCTGACAACCCTAGAGCTAGGGAAGCTTTAAGACAGTGTCTTCCGGATCAATTACGTGATGCGACATTCACTGCATGCCTTCAAGAAGACAACTCAACTAAACATTGGTTGGCTCAACTGATTAAGAACTTGGAAGCCCAGCCGCCACCAGCAAGTCCCGCCCAACAGAATATGTACAAAACAAGAGAGCACTAA

Protein sequence:

>DPOGS200944-PA
MSAQQSPANMQAAVDREKIYSWILELCNPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEITNIYVAMIPPTLTAHQSNRVCNALALMQCVASHPETRSAFLQAHVPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMENGSELSKTVATFILQKILLDDSGLSYICQTYDRFSHVAMILGKMVLSLAKDPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLRDATFTACLQEDNSTKHWLAQLIKNLEAQPPPASPAQQNMYKTREH-