| DPOGS201872 | ||
|---|---|---|
| Transcript | DPOGS201872-TA | 630 bp |
| Protein | DPOGS201872-PA | 209 aa |
| Genomic position | DPSCF300191 + 136802-141896 | |
| RNAseq coverage | 5161x (Rank: top 2%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL013436 | 2e-58 | 98.13% | |
| Bombyx | BGIBMGA006045-TA | 6e-107 | 88.73% | |
| Drosophila | Rab5-PC | 3e-90 | 76.10% | |
| EBI UniRef50 | UniRef50_P61020 | 5e-96 | 81.60% | Ras-related protein Rab-5B n=49 Tax=Opisthokonta RepID=RAB5B_HUMAN |
| NCBI RefSeq | NP_001037614.1 | 2e-105 | 88.73% | small GTP binding protein RAB5 [Bombyx mori] |
| NCBI nr blastp | gi|112983262 | 3e-104 | 88.73% | small GTP binding protein RAB5 [Bombyx mori] |
| NCBI nr blastx | gi|112983262 | 2e-100 | 89.67% | small GTP binding protein RAB5 [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0007264 | 1.1e-92 | small GTPase mediated signal transduction | |
| GO:0005525 | 1.1e-92 | GTP binding | ||
| GO:0015031 | 1.1e-92 | protein transport | ||
| GO:0016020 | 2e-30 | membrane | ||
| GO:0007165 | 2e-30 | signal transduction | ||
| GO:0006184 | 2e-30 | GTP catabolic process | ||
| GO:0003924 | 2e-30 | GTPase activity | ||
| GO:0005622 | 6.1e-11 | intracellular | ||
| GO:0006886 | 6.6e-06 | intracellular protein transport | ||
| GO:0006913 | 6.6e-06 | nucleocytoplasmic transport | ||
| KEGG pathway | tca:100141572 | 1e-98 | ||
| K07889 (RAB5C) | maps-> | Amoebiasis | ||
| Endocytosis | ||||
| Phagosome | ||||
| Vasopressin-regulated water reabsorption | ||||
| InterPro domain | [21-184] IPR003579 | 1.1e-92 | Small GTPase superfamily, Rab type | |
| [22-181] IPR001806 | 1.5e-61 | Small GTPase superfamily | ||
| [18-184] IPR020849 | 2e-30 | Small GTPase superfamily, Ras type | ||
| [21-174] IPR005225 | 7.1e-27 | Small GTP-binding protein domain | ||
| [23-183] IPR003578 | 6.1e-11 | Small GTPase superfamily, Rho type | ||
| [26-202] IPR002041 | 6.6e-06 | Ran GTPase | ||
| Orthology group | MCL10834 | Multiple-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS201872-TA
ATGGCAACGAACCGAAGTGCTCAGAGGCCAAACGGGGCGCCTCAGACTAAGGTGTGCCAGTTCAAGCTGGTTCTGTTGGGTGAGTCGGCTGTGGGCAAGTCTTCATTGGTGCTACGTTTCGTGAAGGGTCAGTTCCATGAGTATCAAGAGAGCACTATCGGAGCAGCATTCCTTACACAGACGCTCTGCCTCGACGACACCACTGTCAAGTTTGAAATTTGGGACACGGCAGGACAGGAGAGATATCACAGCCTAGCTCCTATGTACTACCGGGGAGCGCAGGCCGCCATCGTAGTCTACGACATTACTAATCAGGACACATTCGGTCGCGCCAAGAACTGGGTGAAGGAGCTCCAGCGGCAGGCGTCTCCGTCCATCGTGATCGCTCTGGCCGGGAACAAGAGCGACCTGGCCGCCAAGAGGATGGTCGAGTTCGAGGAGGCGCAGGCCTACGCCGACGAGAACGGCCTGCTCTTCATGGAGACCAGCGCCAAGACCGCCATGAACGTTAACGATATATTCCTAGCTATCGCGAACAAGTTACCAAAGAGCGAGGTGTCCAGCGGCGGCGCGGGGACCAGAGTGCTCAACGACGCGGACGCGCCGCGGAGCTCCTCCTGCTGCAAGTGA
>DPOGS201872-PA
MATNRSAQRPNGAPQTKVCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLAAKRMVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANKLPKSEVSSGGAGTRVLNDADAPRSSSCCK-