DPOGS203397 | ||
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Transcript | DPOGS203397-TA | 576 bp |
Protein | DPOGS203397-PA | 191 aa |
Genomic position | DPSCF300003 + 931757-932599 | |
RNAseq coverage | 1905x (Rank: top 7%) |
Annotation | ||||
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Heliconius | HMEL016632 | 9e-93 | 87.96% |   |
Bombyx | BGIBMGA012295-TA | 1e-106 | 97.38% |   |
Drosophila | Cdc42-PA | 2e-101 | 92.67% |   |
EBI UniRef50 | UniRef50_P60953 | 8e-98 | 91.62% | Cell division control protein 42 homolog n=904 Tax=root RepID=CDC42_HUMAN |
NCBI RefSeq | XP_002429222.1 | 4e-102 | 94.24% | RAC GTPase, putative [Pediculus humanus corporis] |
NCBI nr blastp | gi|242017492 | 6e-101 | 94.24% | RAC GTPase, putative [Pediculus humanus corporis] |
NCBI nr blastx | gi|242017492 | 2e-99 | 94.24% | RAC GTPase, putative [Pediculus humanus corporis] |
Group | ||||
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Gene Ontology | GO:0007264 | 5.4e-129 | small GTPase mediated signal transduction | |
GO:0005622 | 5.4e-129 | intracellular | ||
GO:0005525 | 5.4e-129 | GTP binding | ||
GO:0016020 | 2e-19 | membrane | ||
GO:0007165 | 2e-19 | signal transduction | ||
GO:0006184 | 2e-19 | GTP catabolic process | ||
GO:0003924 | 2e-19 | GTPase activity | ||
GO:0015031 | 2e-13 | protein transport | ||
KEGG pathway | phu:Phum_PHUM424410 | 1e-101 |   | |
  | K04393 (CDC42) | maps-> | Axon guidance | |
  |   |   | Pathogenic Escherichia coli infection | |
  |   |   | Regulation of actin cytoskeleton | |
  |   |   | MAPK signaling pathway | |
  |   |   | Fc gamma R-mediated phagocytosis | |
  |   |   | Pathways in cancer | |
  |   |   | Shigellosis | |
  |   |   | Chemokine signaling pathway | |
  |   |   | Leukocyte transendothelial migration | |
  |   |   | Neurotrophin signaling pathway | |
  |   |   | T cell receptor signaling pathway | |
  |   |   | Focal adhesion | |
  |   |   | GnRH signaling pathway | |
  |   |   | Tight junction | |
  |   |   | Bacterial invasion of epithelial cells | |
  |   |   | Adherens junction | |
  |   |   | MAPK signaling pathway - yeast | |
  |   |   | Renal cell carcinoma | |
  |   |   | Pancreatic cancer | |
  |   |   | Endocytosis | |
  |   |   | Epithelial cell signaling in Helicobacter pylori infection | |
  |   |   | VEGF signaling pathway | |
InterPro domain | [6-179] IPR003578 | 5.4e-129 | Small GTPase superfamily, Rho type | |
[5-175] IPR001806 | 3.8e-54 | Small GTPase superfamily | ||
[1-157] IPR005225 | 6.9e-43 | Small GTP-binding protein domain | ||
[1-179] IPR020849 | 2e-19 | Small GTPase superfamily, Ras type | ||
[4-179] IPR003579 | 2e-13 | Small GTPase superfamily, Rab type | ||
Orthology group | MCL11704 |   | Multiple-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS203397-TA
ATGCAAACTATAAAATGTGTTGTGGTGGGAGATGGAGCGGTCGGTAAAACTTGCTTGCTCATAAGCTATACAACAAACAAGTTCCCATCGGAGTATGTGCCGACGGTGTTTGATAACTATGCTGTCACCGTTATGATTGGTGGGGAACCCTACACTCTTGGACTTTTTGATACTGCAGGTCAGGAAGATTATGATAGACTGAGACCTCTAAGTTATCCGCAAACAGATGTTTTCCTTGTATGCTTCAGTGTTGTAAGTCCCAGTTCGTTTGAAAATGTTAAAGAAAAGTGGGTGCCGGAGATTACTCATCATCAACAGAAGACACCGTTTCTCCTTGTAGGGACTCAGATTGATTTAAGAGATGATCCCGGGACTATGGAGAAACTGGCTAAGATCAAACAAAAGCCGGTGTCGTTTGAACAAGGAGAGAAATTAGCTAAGGAGTTGAAAGCAGTTAAATATGTGGAGTGCTCAGCTCTAACCCAGAAAGGGCTAAAGAATGTGTTTGACGAGGCCATACTGGCAGCCCTGGAACCTCCGGAACCTGTCAAGAAAAAGATATGCGTCCTGCTGTAA
>DPOGS203397-PA
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLVGTQIDLRDDPGTMEKLAKIKQKPVSFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEPVKKKICVLL-