| DPOGS203717 | ||
|---|---|---|
| Transcript | DPOGS203717-TA | 585 bp |
| Protein | DPOGS203717-PA | 194 aa |
| Genomic position | DPSCF300010 - 1176959-1178274 | |
| RNAseq coverage | 75x (Rank: top 65%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL008163 | 2e-37 | 48.85% | |
| Bombyx | BGIBMGA004884-TA | 4e-35 | 50.39% | |
| Drosophila | CG10219-PA | 2e-19 | 30.12% | |
| EBI UniRef50 | UniRef50_E0VV75 | 3e-22 | 39.83% | Succinate dehydrogenase, cytochrome B small subunit n=1 Tax=Pediculus humanus corporis RepID=E0VV75_PEDHC |
| NCBI RefSeq | XP_002430019.1 | 7e-23 | 39.83% | succinate dehydrogenase, cytochrome B small subunit [Pediculus humanus corporis] |
| NCBI nr blastp | gi|242019132 | 1e-21 | 39.83% | succinate dehydrogenase, cytochrome B small subunit [Pediculus humanus corporis] |
| NCBI nr blastx | gi|242019132 | 3e-21 | 39.83% | succinate dehydrogenase, cytochrome B small subunit [Pediculus humanus corporis] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0006099 | 1.3e-25 | tricarboxylic acid cycle | |
| GO:0005740 | 1.3e-25 | mitochondrial envelope | ||
| GO:0020037 | 1.3e-25 | heme binding | ||
| GO:0005506 | 1.3e-25 | iron ion binding | ||
| GO:0016021 | 1.3e-25 | integral to membrane | ||
| KEGG pathway | phu:Phum_PHUM459220 | 2e-22 | ||
| K00237 (SDHD, SDH4) | maps-> | Huntington's disease | ||
| Citrate cycle (TCA cycle) | ||||
| Oxidative phosphorylation | ||||
| Alzheimer's disease | ||||
| Parkinson's disease | ||||
| InterPro domain | [67-176] IPR007992 | 1.3e-25 | Cytochrome b, succinate dehydrogenase small subunit, CybS | |
| Orthology group | MCL11451 | Multiple-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS203717-TA
ATGATTCTTTCATATCTTTCGCGTCGGCAAGCTAAAATAGCAACATATGTCCGATATCCAACATCTATAAGAATAGACCCAGTATTAAAATCAAGCACTGCGTTATCTTCTACTATTCAGTTAAATAACTGTACAACCATGAAGCCTATAGGATCACCATTTTTTAATCCTATTAAACCGTTTAGCACGACGATGGTACGTTTAGATGATGAAAAACCTCATGATCACGCTAAACTCTGGATTATTGAAAAGGGAACGGCGGCTGTTATGTTAGTGCTTATACCATTTGGACTATTGATTCCCAATAAACTTTTTGACTCTATTTTGACAATTCTTATAACAGCTCATAGCTATTGGGGTATGGAAGCTATCATGGTAGAGTATGTGCGTGTATTGTTATTCGGTCCAACGATTCCGAAAGTTGCCATGGGTGTTGTTTATGCTTTAACTGTCCTTATGATGGGAGGTCTATTTTATCTTACCTTCAATGATATCGGGATGTGCAGAGCATTCTGGAGAATTTGGAGGAACATGAGAAAGTCGAAAGATGCTCCCCGTACTCCAAGCGGTGGAAAAACATGTTAA
>DPOGS203717-PA
MILSYLSRRQAKIATYVRYPTSIRIDPVLKSSTALSSTIQLNNCTTMKPIGSPFFNPIKPFSTTMVRLDDEKPHDHAKLWIIEKGTAAVMLVLIPFGLLIPNKLFDSILTILITAHSYWGMEAIMVEYVRVLLFGPTIPKVAMGVVYALTVLMMGGLFYLTFNDIGMCRAFWRIWRNMRKSKDAPRTPSGGKTC-