DPOGS203722 | ||
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Transcript | DPOGS203722-TA | 1122 bp |
Protein | DPOGS203722-PA | 373 aa |
Genomic position | DPSCF300010 - 965888-983512 | |
RNAseq coverage | 1x (Rank: top 93%) |
Annotation | ||||
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Heliconius | HMEL008536 | 5e-65 | 95.65% |   |
Bombyx | BGIBMGA003529-TA | 6e-109 | 59.83% |   |
Drosophila | nAcRalpha-96Aa-PA | 7e-52 | 35.21% |   |
EBI UniRef50 | UniRef50_F4W9W4 | 2e-92 | 48.37% | Neuronal acetylcholine receptor subunit alpha-7 n=1 Tax=Acromyrmex echinatior RepID=F4W9W4_ACREC |
NCBI RefSeq | NP_001166811.1 | 1e-146 | 70.91% | nicotinic acetylcholine receptor subunit alpha 5 isoform A [Bombyx mori] |
NCBI nr blastp | gi|290560638 | 3e-145 | 70.91% | nicotinic acetylcholine receptor subunit alpha 5 isoform A precursor [Bombyx mori] |
NCBI nr blastx | gi|290560638 | 2e-142 | 70.91% | nicotinic acetylcholine receptor subunit alpha 5 isoform A precursor [Bombyx mori] |
Group | ||||
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Gene Ontology | GO:0016021 | 2e-85 | integral to membrane | |
GO:0006811 | 2e-85 | ion transport | ||
GO:0016020 | 1.7e-56 | membrane | ||
GO:0006810 | 1.7e-56 | transport | ||
GO:0005230 | 1.7e-56 | extracellular ligand-gated ion channel activity | ||
GO:0004889 | 1.3e-10 | nicotinic acetylcholine-activated cation-selective channel activity | ||
GO:0005216 | 1.3e-10 | ion channel activity | ||
GO:0045211 | 1.3e-10 | postsynaptic membrane | ||
KEGG pathway | ptr:464500 | 2e-53 |   | |
  | K04814 (CHRNB3) | maps-> | Neuroactive ligand-receptor interaction | |
InterPro domain | [2-372] IPR006201 | 2e-85 | Neurotransmitter-gated ion-channel | |
[14-174] IPR006202 | 1.7e-56 | Neurotransmitter-gated ion-channel ligand-binding | ||
[177-366] IPR006029 | 4.2e-28 | Neurotransmitter-gated ion-channel transmembrane domain | ||
[47-63] IPR002394 | 1.3e-10 | Nicotinic acetylcholine receptor | ||
Orthology group | MCL17699 |   | Insect specific |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS203722-TA
ATGGAGTATAAAAAAGAAGTACGTACATGTGATGAAGAATACCAACTAATTCGACATCTAATGGGAAAGTATGACGCCTCAGTGCGCCCTGTGGAGAACTCCTCCCACCCCCTCCTCGTGACCTTCGGCGTCTCACTGCATCACATCATCGACGTGGAAGAAAAAGATCAACTGTTGACAACCAACTGTTGGATAACCCAAATATGGACAGATCACCATTTACGGTGGAATGTTAGCGATTTTGATGGAATCAACGTTATAAGAATACCATACGAAAGAGTCTGGAAGCCGGATATAATCTTATATAATAACGCGGATCCCAACTACCGATCAGCTGTTATCAACACTAATGTAATAGTGAAGAACACTGGTGAGGTGACGTGGTTGAGCCACGGTATATATGTGTCCGTATGCGACATCAACGTGGAACAATTCCCCTTTGATATCCAGCTCTGCACCATGAAGTGGGCTTCATGGACCTACGATGGCTTTCAGATCTTACATGCAATAAGAAACGATAGTTACCATGTCCGTATTACGCTCTTAGTATTTTACGTGCCATCGGAGTCTGGGGAAAAAGTCACACTGGGAATTAGCGCGCTTCTTTCGATGACAGTATTTCTTATGACAATAAGAGATACGCTGCCTCCAACCGAAAAAACACCATTAATAAGTTTATACTATGGAGTAAGTACGTGTCTGGTGACATTCTCAGCCTCTCTGTCGGTCTTCACTCTTAATATATCTTACAGGCAAACAAGCGATGTTGTTCGTAGAGGAGTGAGAGGGCAGCCGGTGCCGGCGATCGTACGTGAGCTCGTATTGCAGAGGCTGGCTCGCTTACTTTGCATAAACTTCGATACTGACGTTAAGAATGACAGTACAGTGACTACAGGGGTGCAAGTGAATCCGCGTACAGGGTCACGGCTGAAGGCCGAGATATTAGATGGACCAGCGCCTGCCTCTCCACGCTTTACCAGAAACCACAACCACCTCATTGTAGCAGACCGCGCTCTTCTTGCAGTATTTGTGCTTGTTACAACAATATCTACAGCTGCTATTCTCCTACCTCAACTAAACAATCTACACGTAGGTAATACGCCTTTAAAACCACCATCCTAG
>DPOGS203722-PA
MEYKKEVRTCDEEYQLIRHLMGKYDASVRPVENSSHPLLVTFGVSLHHIIDVEEKDQLLTTNCWITQIWTDHHLRWNVSDFDGINVIRIPYERVWKPDIILYNNADPNYRSAVINTNVIVKNTGEVTWLSHGIYVSVCDINVEQFPFDIQLCTMKWASWTYDGFQILHAIRNDSYHVRITLLVFYVPSESGEKVTLGISALLSMTVFLMTIRDTLPPTEKTPLISLYYGVSTCLVTFSASLSVFTLNISYRQTSDVVRRGVRGQPVPAIVRELVLQRLARLLCINFDTDVKNDSTVTTGVQVNPRTGSRLKAEILDGPAPASPRFTRNHNHLIVADRALLAVFVLVTTISTAAILLPQLNNLHVGNTPLKPPS-