DPOGS203820 | ||
---|---|---|
Transcript | DPOGS203820-TA | 381 bp |
Protein | DPOGS203820-PA | 126 aa |
Genomic position | DPSCF300010 + 2254796-2255552 | |
RNAseq coverage | 316x (Rank: top 36%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL013332 | 2e-69 | 97.62% |   |
Bombyx | % |   | ||
Drosophila | CG13298-PA | 3e-54 | 77.31% |   |
EBI UniRef50 | UniRef50_Q7QCS0 | 2e-57 | 80.95% | AGAP002780-PA n=7 Tax=Eukaryota RepID=Q7QCS0_ANOGA |
NCBI RefSeq | NP_001037588.1 | 1e-67 | 96.83% | 14 kDa subunit splicing factor 3b [Bombyx mori] |
NCBI nr blastp | gi|112982994 | 3e-66 | 96.83% | 14 kDa subunit splicing factor 3b [Bombyx mori] |
NCBI nr blastx | gi|112982994 | 4e-65 | 96.83% | 14 kDa subunit splicing factor 3b [Bombyx mori] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0000166 | 1.5e-17 | nucleotide binding | |
GO:0003676 | 1.2e-15 | nucleic acid binding | ||
KEGG pathway | aag:AaeL_AAEL005909 | 1e-60 |   | |
  | K12833 (SF3B14) | maps-> | Spliceosome | |
InterPro domain | [18-96] IPR012677 | 1.5e-17 | Nucleotide-binding, alpha-beta plait | |
[20-90] IPR000504 | 1.2e-15 | RNA recognition motif domain | ||
Orthology group | MCL12824 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS203820-TA
ATGGCACTAGCTCTTCAAAGGCGGGCAAATGTGAGGCTGCCTCCAGAGGTTAATAGGATATTATATATCAGAAATTTACCATATAAAATTTCAGCTGAAGAAATGTATGATATATTCGGAAAATATGGAGCTATTCGACAAATAAGAGTTGGAAATACTCCTGAAACCAGAGGAACCGCCTTTGTAGTATATGAGGATATATTTGATGCCAAAAATGCATGTGATCATTTATCTGGATTTAATGTTTGCAATCGGTATTTAGTTGTACTTTACTACAGATCAAATAAAGCATTTAAGGGTATGGATATTGAAAAGAAACAAGAAGAATTAGATACACTGAAAAAGAAATATGGAATTTCATCTGATGATTTAAGGAAATAA
>DPOGS203820-PA
MALALQRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYRSNKAFKGMDIEKKQEELDTLKKKYGISSDDLRK-