DPOGS203971 | ||
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Transcript | DPOGS203971-TA | 618 bp |
Protein | DPOGS203971-PA | 205 aa |
Genomic position | DPSCF300005 + 732236-733025 | |
RNAseq coverage | 42x (Rank: top 72%) |
Annotation | ||||
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Heliconius | HMEL010374 | 9e-98 | 83.33% |   |
Bombyx | BGIBMGA000732-TA | 5e-81 | 69.52% |   |
Drosophila | RFeSP-PA | 1e-21 | 40.41% |   |
EBI UniRef50 | UniRef50_Q1G0W2 | 1e-61 | 53.50% | Ubiquinol-cytochrome c reductase iron-sulfur subunit n=21 Tax=Pancrustacea RepID=Q1G0W2_BOMMO |
NCBI RefSeq | NP_001106738.1 | 2e-62 | 53.50% | ubiquinol-cytochrome c reductase [Bombyx mori] |
NCBI nr blastp | gi|164448652 | 4e-61 | 53.50% | ubiquinol-cytochrome c reductase [Bombyx mori] |
NCBI nr blastx | gi|315258472 | 2e-60 | 54.08% | ubiquinol-cytochrome c reductase [Spodoptera litura] |
Group | ||||
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Gene Ontology | GO:0016679 | 8.7e-72 | oxidoreductase activity, acting on diphenols and related substances as donors | |
GO:0055114 | 8.7e-72 | oxidation-reduction process | ||
GO:0008121 | 2e-48 | ubiquinol-cytochrome-c reductase activity | ||
GO:0051537 | 1.4e-37 | 2 iron, 2 sulfur cluster binding | ||
GO:0016491 | 1.4e-37 | oxidoreductase activity | ||
GO:0016020 | 4.5e-15 | membrane | ||
KEGG pathway | api:100161745 | 1e-61 |   | |
  | K00411 (RIP1, UQCRFS1, petA) | maps-> | Huntington's disease | |
  |   |   | Oxidative phosphorylation | |
  |   |   | Alzheimer's disease | |
  |   |   | Cardiac muscle contraction | |
  |   |   | Parkinson's disease | |
InterPro domain | [66-205] IPR014349 | 8.7e-72 | Rieske iron-sulphur protein | |
[60-205] IPR006317 | 2e-48 | Ubiquinol-cytochrome c reductase, iron-sulphur subunit | ||
[80-204] IPR017941 | 1.4e-37 | Rieske [2Fe-2S] iron-sulphur domain | ||
[142-153] IPR005805 | 4.5e-15 | Rieske iron-sulphur protein, C-terminal | ||
[9-77] IPR004192 | 2.6e-13 | Ubiquinol cytochrome reductase, transmembrane domain | ||
Orthology group | MCL26561 |   | Lepidoptera specific |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS203971-TA
ATGTGGGCAAAAGTGGTGGAGAGGCTTCATCGAGATATAAAACATCCAAACTTTGATGCATACAGAAAAGAGAAGTTCAAGGATCCGAGCAAAACCACTTGGCATTCTCAAGATGAAAAATACGGTTACACTTATGTGGTTGGCTTTTTTGGATTGCTAGGTGGAATGTATTGTACGAAAACAGAACTTATTCATTTCTTACTAAGCATGAGTGCTCCGGCTGATGTTCTGGCATTGGCTTCGATCGAAATTGATATAGGAAATATAGCACCAGGTGCGTGTTTATCATATAAATGGCGAGGAAAGCCACTTTTTGTGAAACATAGAACTGTGGGTGAAATTTCGGCTGAAGCGAAAACTCCTCTTAGTTTACTGATAGATCCAGAAACACCTGAGCAACGTACCCAGAAGCCTGAATGGCTTATAGTTATAGGCATATGTACTCATTTAGGTTGTGTTCCTGTTCCGAATTCTGGAGATTGGGCTGGTGGATTCTATTGTCCTTGCCATGGCAGTCATTATGATAACGTTGGTAGGGCTCGAAAGGGTCCAGCTCCTCTAAACTTGGAAGTGCCACCTTACACCTTCCTTTCTGATACATTAGTTCTAGTAGGATAG
>DPOGS203971-PA
MWAKVVERLHRDIKHPNFDAYRKEKFKDPSKTTWHSQDEKYGYTYVVGFFGLLGGMYCTKTELIHFLLSMSAPADVLALASIEIDIGNIAPGACLSYKWRGKPLFVKHRTVGEISAEAKTPLSLLIDPETPEQRTQKPEWLIVIGICTHLGCVPVPNSGDWAGGFYCPCHGSHYDNVGRARKGPAPLNLEVPPYTFLSDTLVLVG-