| DPOGS205446 | ||
|---|---|---|
| Transcript | DPOGS205446-TA | 420 bp |
| Protein | DPOGS205446-PA | 139 aa |
| Genomic position | DPSCF300332 + 103463-103882 | |
| RNAseq coverage | 15000x (Rank: top 1%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL014719 | 2e-64 | 95.16% | |
| Bombyx | BGIBMGA009208-TA | 1e-62 | 89.93% | |
| Drosophila | RpL28-PG | 3e-42 | 58.70% | |
| EBI UniRef50 | UniRef50_Q962T2 | 6e-60 | 89.68% | 60S ribosomal protein L28 n=13 Tax=Endopterygota RepID=RL28_SPOFR |
| NCBI RefSeq | NP_001037237.1 | 3e-61 | 89.93% | ribosomal protein L28 [Bombyx mori] |
| NCBI nr blastp | gi|315115473 | 4e-67 | 91.37% | ribosomal protein L28 [Euphydryas aurinia] |
| NCBI nr blastx | gi|315115473 | 7e-68 | 91.37% | ribosomal protein L28 [Euphydryas aurinia] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005840 | 5.1e-58 | ribosome | |
| GO:0006412 | 5.1e-58 | translation | ||
| GO:0005622 | 5.1e-58 | intracellular | ||
| GO:0003735 | 5.1e-58 | structural constituent of ribosome | ||
| KEGG pathway | ame:552774 | 7e-49 | ||
| K02903 (RP-L28e, RPL28) | maps-> | Ribosome | ||
| InterPro domain | [1-139] IPR002672 | 5.1e-58 | Ribosomal protein L28e | |
| Orthology group | MCL12930 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS205446-TA
ATGTCGTCCCATTTAAATTGGATGATCATCCGAAACAACAACGCATTTCTTGTGAAAAAACGTAACATCAAGAAGCCATTCAGTAAGGAGCCTAACAATGTGACTAACCTCAACTCGTTCAAATACAATGGCCTGATCCACAAAAAAGCAGTTGGTGTTGTTGAAAATCCCGACAGGAAAGGCTTCTCTGTGGTATACAAAAAGGCCAAGGCTACAAATAAGCCAGCGAAGAACCTTATCAGTCGCCCATTTAAAGCTGGCGCCAGAAGATCTCTCCACAAAGTGAAGCGGCTTCTCAGAGCCAACAACTACCGTACTGACTTGGCCAAGGCGACCCTTCGTCGTGCTTCTGCCATCCTTCGTTCCCAAAGGCCCGTCAAGGCAAAGAAACCTAAAGCGGCTGCCGCCAAGTCTGAATAA
>DPOGS205446-PA
MSSHLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLNSFKYNGLIHKKAVGVVENPDRKGFSVVYKKAKATNKPAKNLISRPFKAGARRSLHKVKRLLRANNYRTDLAKATLRRASAILRSQRPVKAKKPKAAAAKSE-