| DPOGS207587 | ||
|---|---|---|
| Transcript | DPOGS207587-TA | 360 bp |
| Protein | DPOGS207587-PA | 119 aa |
| Genomic position | DPSCF300072 + 879054-879567 | |
| RNAseq coverage | 1623x (Rank: top 8%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL018028 | 3e-38 | 90.76% | |
| Bombyx | BGIBMGA004695-TA | 5e-22 | 73.08% | |
| Drosophila | % | |||
| EBI UniRef50 | UniRef50_A9X4T2 | 1e-19 | 73.08% | HMGA n=2 Tax=Neoptera RepID=A9X4T2_BOMMO |
| NCBI RefSeq | NP_001106737.1 | 2e-20 | 73.08% | high mobility group protein A [Bombyx mori] |
| NCBI nr blastp | gi|164448650 | 4e-19 | 73.08% | high mobility group protein A [Bombyx mori] |
| NCBI nr blastx | gi|164448650 | 4e-43 | 77.12% | high mobility group protein A [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005634 | 4.5e-06 | nucleus | |
| GO:0003677 | 4.5e-06 | DNA binding | ||
| GO:0006355 | 4.5e-06 | regulation of transcription, DNA-dependent | ||
| GO:0000785 | 4.5e-06 | chromatin | ||
| KEGG pathway | ||||
| InterPro domain | [11-21] IPR020478 | 9.7e-11 | AT hook-like | |
| [28-40] IPR000116 | 4.5e-06 | High mobility group, HMG-I/HMG-Y | ||
| Orthology group | MCL25054 | Lepidoptera specific | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS207587-TA
ATGTCTGACGACGGTTCAACGGCTGTGGAAAAAAAAGGACGCGGTAGACCCAAAGCGAATGGAACACAATCGGAAGCCAAAGGAGATGCCAAAAAAAGAGGCAGACCCCCTGTAGCTCCAGCCAAATCAAAAGAATCGAAAAATTCGTCAGATGATGAACAGGCACCAGTCGCTAAAAGGGGTAGAGGTAGACCGAAAGGATCAAAGAAAAAGGCAGCCGCTCCAAAAGCTAAGGGTGGATCTGGTGAAGGCCGTGGTCGTGGAAGGCCACGTAAGGATGCACCACCACCTAAAAAGGATGCCGCCTCAACCGAAGAAGAGCAAGAAGATGAAGAAGAAGAAGAAGGTTCTGACCAGTAA
>DPOGS207587-PA
MSDDGSTAVEKKGRGRPKANGTQSEAKGDAKKRGRPPVAPAKSKESKNSSDDEQAPVAKRGRGRPKGSKKKAAAPKAKGGSGEGRGRGRPRKDAPPPKKDAASTEEEQEDEEEEEGSDQ-