DPOGS210833 | ||
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Transcript | DPOGS210833-TA | 399 bp |
Protein | DPOGS210833-PA | 132 aa |
Genomic position | DPSCF300027 - 55508-56019 | |
RNAseq coverage | 19058x (Rank: top 1%) |
Annotation | ||||
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Heliconius | HMEL021302 | 5e-72 | 99.24% |   |
Bombyx | BGIBMGA003923-TA | 1e-72 | 100.00% |   |
Drosophila | RpS24-PA | 4e-60 | 82.44% |   |
EBI UniRef50 | UniRef50_B0X1C1 | 5e-55 | 82.17% | 60S ribosomal protein L17 n=4 Tax=Coelomata RepID=B0X1C1_CULQU |
NCBI RefSeq | NP_001093077.1 | 4e-71 | 100.00% | ribosomal protein S24 [Bombyx mori] |
NCBI nr blastp | gi|151301000 | 1e-69 | 100.00% | ribosomal protein S24 [Bombyx mori] |
NCBI nr blastx | gi|151301000 | 1e-69 | 100.00% | ribosomal protein S24 [Bombyx mori] |
Group | ||||
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Gene Ontology | GO:0005840 | 1.8e-99 | ribosome | |
GO:0006412 | 1.8e-99 | translation | ||
GO:0005622 | 1.8e-99 | intracellular | ||
GO:0003735 | 1.8e-99 | structural constituent of ribosome | ||
GO:0000166 | 3.5e-48 | nucleotide binding | ||
KEGG pathway | tca:655928 | 3e-63 |   | |
  | K02974 (RP-S24e, RPS24) | maps-> | Ribosome | |
InterPro domain | [5-128] IPR001976 | 1.8e-99 | Ribosomal protein S24e | |
[7-107] IPR012677 | 3.5e-48 | Nucleotide-binding, alpha-beta plait | ||
[6-107] IPR012678 | 8.9e-41 | Ribosomal protein L23/L15e | ||
Orthology group | MCL12131 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS210833-TA
ATGAGTGAAGGCACAGCCACTATTCGCACTCGCAAATTTATGACCAACAGATTGTTGGCGCGCAAGCAGATGGTCTGCGATGTCCTTCATCCAGGAAAACCCACTGTTAGTAAAACTGAGATCCGTGAGAAGCTCGCGAAGATGTACAAGGTGACGCCAGACGTTGTCTTCGTATTTGGTTTCAAAACGAACTTCGGTGGTGGAAAATCCACTGGTTTCGCCTTAATATACGACACTCTGGATCTGGCTAAAAAGTTTGAGCCCAAACACAGACTTGCTCGCCACGGACTGTATGAGAAGAAGAGGCCGACACGCAAACAGCGTAAGGAACGTAAGAACAGGATGAAGAAGGTGCGTGGTACCAAGAAATCCAAGGTCGGAGCTGCGTCTAAGAAGTGA
>DPOGS210833-PA
MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAASKK-