DPOGS211177 | ||
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Transcript | DPOGS211177-TA | 816 bp |
Protein | DPOGS211177-PA | 271 aa |
Genomic position | DPSCF300007 + 408065-409598 | |
RNAseq coverage | 323x (Rank: top 35%) |
Annotation | ||||
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Heliconius | HMEL012416 | 6e-134 | 90.44% |   |
Bombyx | BGIBMGA003166-TA | 3e-129 | 84.94% |   |
Drosophila | TfIIFbeta-PA | 4e-98 | 66.04% |   |
EBI UniRef50 | UniRef50_P41900 | 5e-96 | 66.04% | General transcription factor IIF subunit 2 n=34 Tax=Coelomata RepID=T2FB_DROME |
NCBI RefSeq | XP_623868.1 | 5e-109 | 74.81% | PREDICTED: similar to Transcription initiation factor IIF subunit beta (ATP-dependent helicase TfIIF-beta) (TFIIF-beta) isoform 1 [Apis mellifera] |
NCBI nr blastp | gi|332376103 | 1e-108 | 70.72% | unknown [Dendroctonus ponderosae] |
NCBI nr blastx | gi|380020787 | 5e-112 | 72.96% | PREDICTED: general transcription factor IIF subunit 2-like [Apis florea] |
Group | ||||
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Gene Ontology | GO:0005524 | 3.6e-101 | ATP binding | |
GO:0005674 | 3.6e-101 | transcription factor TFIIF complex | ||
GO:0006367 | 3.6e-101 | transcription initiation from RNA polymerase II promoter | ||
GO:0003824 | 4e-34 | catalytic activity | ||
KEGG pathway | ame:551470 | 1e-108 |   | |
  | K03139 (TFIIF2) | maps-> | Basal transcription factors | |
InterPro domain | [13-271] IPR003196 | 3.6e-101 | Transcription initiation factor IIF, beta subunit | |
[7-131] IPR011039 | 4e-34 | Transcription Factor IIF, Rap30/Rap74, interaction | ||
[187-254] IPR011991 | 8.5e-29 | Winged helix-turn-helix transcription repressor DNA-binding | ||
Orthology group | MCL14429 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS211177-TA
ATGAGTAATTCCAATACAGTGCCCCATGTCGACCGTGAATTAGATTTGTCAAATACGGGAAGAGGTGTCTGGCTGGTAAAGGTGCCGAAATATATTGCCAACAAATGGGACAAAGCTTCAGGTGATATAGAAGTAGGTAAATTAAAGATATCTCGAGTTCCTGGTCAACGTGCTCAAGTCCAGCTGTCGCTGTCGGAAGCTGTTTTATGTTTAAACGAACCCGGAGAACAAGCTTTACCTAAGGAGCATCGCCTCGATGTATCTAATGTAACACGACAATCTTTAGGAGTTTTTTCTCATGCTGTTCCATCAAATACGGATACAGTGGTTCCTGAATCTGAAAAACTTTATATGGAAGGTAGAATAGTGCAAAAATTAGAATGTAAGCCATATGCAGACCCAACTTATTACAAGCTTAAGTCTGAATCAATAAGGAAGGCTTTGATGCCACAAAGACAAGTACAACAACTGAAAGGAATTGTGCAAAATTTCAAACCTGTGTCTGACCACAAACATAATATTGACTATCAAGTAAAGAAGAAAGCGGAAGGTAAAAAGGCTCGTGATGACAAGGAATCGGTGCTCAATGTTTTGTTTGCAGCATTTGAGAAACACCAGTATTATAATATTAAGGATTTGCAAAATATAACAAGACAACCTATAGTATATTTGAAGGAAATATTAAAGGAGGTCTGCAATTATAATTTAAAGAATCCCCATAAGAATATGTGGGAATTGAAACCAGAGTACAGGCACTACAAACAGGAGGCCCCTGTTGAGACCAAAGAGGACCCTCAAAGTTCGGACAGCGACTAG
>DPOGS211177-PA
MSNSNTVPHVDRELDLSNTGRGVWLVKVPKYIANKWDKASGDIEVGKLKISRVPGQRAQVQLSLSEAVLCLNEPGEQALPKEHRLDVSNVTRQSLGVFSHAVPSNTDTVVPESEKLYMEGRIVQKLECKPYADPTYYKLKSESIRKALMPQRQVQQLKGIVQNFKPVSDHKHNIDYQVKKKAEGKKARDDKESVLNVLFAAFEKHQYYNIKDLQNITRQPIVYLKEILKEVCNYNLKNPHKNMWELKPEYRHYKQEAPVETKEDPQSSDSD-