DPOGS213877 | ||
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Transcript | DPOGS213877-TA | 612 bp |
Protein | DPOGS213877-PA | 203 aa |
Genomic position | DPSCF300141 + 21091-22662 | |
RNAseq coverage | 827x (Rank: top 16%) |
Annotation | ||||
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Heliconius | HMEL008156 | 2e-75 | 81.42% |   |
Bombyx | BGIBMGA013476-TA | 3e-17 | 81.48% |   |
Drosophila | Dad-PC | 7e-31 | 39.77% |   |
EBI UniRef50 | UniRef50_UPI00021A6B9D | 5e-41 | 50.00% | UPI00021A6B9D related cluster n=3 Tax=unknown RepID=UPI00021A6B9D |
NCBI RefSeq | XP_002428962.1 | 2e-45 | 53.93% | smad6, putative [Pediculus humanus corporis] |
NCBI nr blastp | gi|242016959 | 4e-44 | 53.93% | smad6, putative [Pediculus humanus corporis] |
NCBI nr blastx | gi|242016959 | 1e-44 | 53.93% | smad6, putative [Pediculus humanus corporis] |
Group | ||||
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Gene Ontology | GO:0006355 | 4.2e-54 | regulation of transcription, DNA-dependent | |
GO:0005622 | 4.2e-54 | intracellular | ||
GO:0005515 | 1.4e-44 | protein binding | ||
KEGG pathway | phu:Phum_PHUM411970 | 7e-45 |   | |
  | K04677 (SMAD6_7) | maps-> | Endocytosis | |
  |   |   | TGF-beta signaling pathway | |
InterPro domain | [35-199] IPR013790 | 4.2e-54 | Dwarfin | |
[9-199] IPR008984 | 1.4e-44 | SMAD/FHA domain | ||
[36-200] IPR001132 | 7.9e-44 | SMAD domain, Dwarfin-type | ||
[33-200] IPR017855 | 1.3e-37 | SMAD domain-like | ||
Orthology group | MCL15525 |   | Patchy |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS213877-TA
ATGACCTACAAACTCATCATTAAGTGTCTCATGATATTTCCTGGCGGTACCTCACACAAAGCACCTCGACTCGCCAGTGGAGGGTTCAAGCGTCAGAGCTGGGAGAGCGAGTGGTGCCGGCTGGCGTACTGGGAGCTGACCCAGCGTGTCGGGAGGCAGCTGGGGGTGAGAGTGCGCGCGGTGGACGTGTTCGCCGGCGCCGGGGGTAGCTGCGGCCAGGGGAGACACGGCCTTTGTGTGGACGACCTCGGAGACAGGGGCACGCAGGTGCGGAAGACCCGGGCGAAGATAGGTCTCGGCGTGACGCTATCCTTGGAGGCGGACGGCGTCTGGTTGTACAACCGCAGTCAAGAGCCAGTGTTCGTGTCGTCGCCGGCGCTGGACGCGGCCGCTGCCAAAGCCCTCCTGGTGTGGCGCGTCGCCCCGGGTCATTGTCTGTGCGTTTTCGACCCCGGGGCTCCACCGCCCGCCCTGTCTCTGCCGCACGTCGGCCCCGTCGACAACACCTCCGTCAGGATCTCCTTCGCCAAGGGCTGGGGTCCCAAATATTCCAGGCGTGACGTCACCGCCTGTCCCTGCTGGTTGGAAGTGCTGCTAGCGCCCGCCAGCTGA
>DPOGS213877-PA
MTYKLIIKCLMIFPGGTSHKAPRLASGGFKRQSWESEWCRLAYWELTQRVGRQLGVRVRAVDVFAGAGGSCGQGRHGLCVDDLGDRGTQVRKTRAKIGLGVTLSLEADGVWLYNRSQEPVFVSSPALDAAAAKALLVWRVAPGHCLCVFDPGAPPPALSLPHVGPVDNTSVRISFAKGWGPKYSRRDVTACPCWLEVLLAPAS-