| DPOGS215345 | ||
|---|---|---|
| Transcript | DPOGS215345-TA | 546 bp |
| Protein | DPOGS215345-PA | 181 aa |
| Genomic position | DPSCF300120 + 458894-459857 | |
| RNAseq coverage | 36x (Rank: top 74%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL014737 | 2e-12 | 36.08% | |
| Bombyx | BGIBMGA007978-TA | 1e-57 | 71.83% | |
| Drosophila | snRNP-U1-70K-PA | 9e-13 | 36.46% | |
| EBI UniRef50 | UniRef50_B7Q3Z6 | 2e-50 | 61.25% | U1 small nuclear ribonucleoprotein, putative n=3 Tax=Coelomata RepID=B7Q3Z6_IXOSC |
| NCBI RefSeq | XP_966565.1 | 1e-51 | 61.63% | PREDICTED: similar to U11/U12 snRNP 35K [Tribolium castaneum] |
| NCBI nr blastp | gi|91086635 | 2e-50 | 61.63% | PREDICTED: similar to U11/U12 snRNP 35K [Tribolium castaneum] |
| NCBI nr blastx | gi|91086635 | 3e-51 | 63.31% | PREDICTED: similar to U11/U12 snRNP 35K [Tribolium castaneum] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0000166 | 3.2e-23 | nucleotide binding | |
| GO:0003676 | 5.6e-21 | nucleic acid binding | ||
| KEGG pathway | ||||
| InterPro domain | [49-148] IPR012677 | 3.2e-23 | Nucleotide-binding, alpha-beta plait | |
| [55-128] IPR000504 | 5.6e-21 | RNA recognition motif domain | ||
| Orthology group | MCL16492 | Patchy | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS215345-TA
ATGTTTGACAAAGATTTTACCAAATATGCAACGACGACATATGATCCAATAAAAATAGGTTCAATAGACGGTACTGACACTGCTCCTCATGACCATGGGATTGTAAGAGCACTGAACTCTGAGTATGTTCCGAATAAAAAAGTTAAAGGTGATCCCAATCATACTATATTTGTCGCCAGACTGAACCCGAGGACGACAGAGGATACAATATATTCAGAATTTTCAAAATTTGGAAAAGTGATCAACTGCAGACTTGTGAAGGACATAGTGACTGGAAAATCAAAGCAGTATGCTTTCGTAGAATATGAGAACTTGTCTAGTTTGGATGGAGCTTTAAAGGATATGAACAATGAATATTTAGATAGTTTTGAGATCATAGTGGAGCGGGAAGCAGAAAGGCGTCTCAGAGGGTGGAGGCCGAGACGGCTCGGGGGAGGATTCGGGGGTCGGAAGGAATCTGGGCAGCTGAGATTTGGATGCAGAGAAAGACCCTTCAGAAAACCAATAGTAATTAATCCTAAAAATGTCAAAGTAGAACCTAAATAG
>DPOGS215345-PA
MFDKDFTKYATTTYDPIKIGSIDGTDTAPHDHGIVRALNSEYVPNKKVKGDPNHTIFVARLNPRTTEDTIYSEFSKFGKVINCRLVKDIVTGKSKQYAFVEYENLSSLDGALKDMNNEYLDSFEIIVEREAERRLRGWRPRRLGGGFGGRKESGQLRFGCRERPFRKPIVINPKNVKVEPK-