| New model in OGS2.0 | DPOGS211128 |
|---|---|
| Genomic Position | scaffold196:- 50309-50851 |
| See gene structure | |
| CDS Length | 543 |
| Paired RNAseq reads | 241 |
| Single RNAseq reads | 1956 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003004 (1e-40) |
| Best Drosophila hit | small ribonucleoprotein particle protein B (2e-32) |
| Best Human hit | small nuclear ribonucleoprotein-associated proteins B and B' isoform B' (1e-27) |
| Best NR hit (blastp) | small nuclear ribonucleoprotein polypeptide [Bombyx mori] (3e-55) |
| Best NR hit (blastx) | small nuclear ribonucleoprotein polypeptide [Bombyx mori] (1e-40) |
| GeneOntology terms | GO:0030532 small nuclear ribonucleoprotein complex GO:0000398 nuclear mRNA splicing, via spliceosome GO:0005681 spliceosomal complex GO:0016070 RNA metabolic process GO:0005634 nucleus GO:0007052 mitotic spindle organization GO:0071011 precatalytic spliceosome GO:0071013 catalytic step 2 spliceosome |
| InterPro families | IPR006649 Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type IPR001163 Like-Sm ribonucleoprotein (LSM) domain IPR010920 Like-Sm ribonucleoprotein (LSM)-related domain |
| Orthology group | MCL11842 |
Nucleotide sequence:
ATGCAACAGCACATAAACTATCGAGTCAGGGTAATATTGCAGGACTCGAGAACATTTATT
GGAACATTTAAAGCTTTCGATAAACATATGAATTTAATATTGGGTGACTGTGAGGAGTTT
AGAAAAATCAAGTCCAAAAATACCAAAACCGTTGATAGAGAAGAAAAGAGGACACTCGGT
TTTGTTTTGCTAAGAGGTGAAAACATAGTGTCCCTCACTATAGAAGGACCTCCGCCTCCG
GAAGAAGGCTTGCCTCGCGTCCCGCTGCCTGGTGCTATGGGAGGCCCAGGGGTTGGCAGA
GCGGCTGGTCGAGGCGCGGGTATTGGCGGTGCTCCACCTGGTTTACAGGGCCCGGTAAGA
GGTGTCGGAGGGCCTTCACAGCAGCATATGGCTCCGGGACCTAGGGGACAGTTATCGGCA
CCTCCACAGATGCGAGGCGGTCCAATGATGGGTGGTCCTCCGCCTGGTATGATGGGAGCA
CCTCCAGGAATGGGCCGAGGTGGCCCAGGCAGAGGTGGCCCACCTGGCATGCGTCGATAC
TAA
Protein sequence:
MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTVDREEKRTLG
FVLLRGENIVSLTIEGPPPPEEGLPRVPLPGAMGGPGVGRAAGRGAGIGGAPPGLQGPVR
GVGGPSQQHMAPGPRGQLSAPPQMRGGPMMGGPPPGMMGAPPGMGRGGPGRGGPPGMRRY